Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RE424_RS06435 Genome accession   NZ_CP134047
Coordinates   1296880..1297653 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 21SAU_AGRO3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1291880..1302653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE424_RS06415 trmFO 1292224..1293531 (+) 1308 WP_310790878.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  RE424_RS06420 xerC 1293948..1294844 (+) 897 WP_001015598.1 tyrosine recombinase XerC -
  RE424_RS06425 hslV 1294841..1295386 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  RE424_RS06430 hslU 1295452..1296855 (+) 1404 WP_023913780.1 ATP-dependent protease ATPase subunit HslU -
  RE424_RS06435 codY 1296880..1297653 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RE424_RS06440 - 1297704..1297796 (+) 93 WP_031788481.1 hypothetical protein -
  RE424_RS06445 rpsB 1297995..1298762 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  RE424_RS06450 - 1298796..1298909 (+) 114 WP_001789890.1 hypothetical protein -
  RE424_RS06455 tsf 1298944..1299825 (+) 882 WP_000201387.1 translation elongation factor Ts -
  RE424_RS06460 pyrH 1299962..1300684 (+) 723 WP_000057330.1 UMP kinase -
  RE424_RS06465 frr 1300703..1301257 (+) 555 WP_001280006.1 ribosome recycling factor -
  RE424_RS06470 - 1301630..1302400 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=801913 RE424_RS06435 WP_000055337.1 1296880..1297653(+) (codY) [Staphylococcus aureus strain 21SAU_AGRO3]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=801913 RE424_RS06435 WP_000055337.1 1296880..1297653(+) (codY) [Staphylococcus aureus strain 21SAU_AGRO3]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428