Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RHT80_RS01210 Genome accession   NZ_CP133913
Coordinates   260452..261216 (-) Length   254 a.a.
NCBI ID   WP_001136249.1    Uniprot ID   -
Organism   Escherichia coli strain M23917     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 255452..266216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHT80_RS01200 (RHT80_01195) nikR 259242..259643 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  RHT80_RS01205 (RHT80_01200) nikE 259649..260455 (-) 807 WP_087897856.1 nickel import ATP-binding protein NikE -
  RHT80_RS01210 (RHT80_01205) amiE 260452..261216 (-) 765 WP_001136249.1 nickel import ATP-binding protein NikD Regulator
  RHT80_RS01215 (RHT80_01210) nikC 261216..262049 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  RHT80_RS01220 (RHT80_01215) nikB 262046..262990 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  RHT80_RS01225 (RHT80_01220) nikA 262990..264564 (-) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  RHT80_RS01230 (RHT80_01225) acpT 264675..265262 (-) 588 WP_000285774.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26831.45 Da        Isoelectric Point: 6.5992

>NTDB_id=801460 RHT80_RS01210 WP_001136249.1 260452..261216(-) (amiE) [Escherichia coli strain M23917]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAVALGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=801460 RHT80_RS01210 WP_001136249.1 260452..261216(-) (amiE) [Escherichia coli strain M23917]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGTGGCGCTGGGAATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398