Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   P3T93_RS06040 Genome accession   NZ_CP119997
Coordinates   1218363..1220750 (+) Length   795 a.a.
NCBI ID   WP_040030023.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain Dog166     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1213363..1225750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T93_RS06020 (P3T93_06020) sal 1213548..1215179 (+) 1632 WP_323701957.1 Sal family ABC-F type ribosomal protection protein -
  P3T93_RS06025 (P3T93_06025) - 1215240..1216382 (+) 1143 WP_323701958.1 cysteine desulfurase family protein -
  P3T93_RS06030 (P3T93_06030) mnmA 1216383..1217495 (+) 1113 WP_019469417.1 tRNA 2-thiouridine(34) synthase MnmA -
  P3T93_RS06035 (P3T93_06035) - 1217693..1218358 (+) 666 WP_040030022.1 tetratricopeptide repeat protein -
  P3T93_RS06040 (P3T93_06040) recD2 1218363..1220750 (+) 2388 WP_040030023.1 ATP-dependent RecD-like DNA helicase Machinery gene
  P3T93_RS06045 (P3T93_06045) alaS 1221050..1223680 (+) 2631 WP_046467732.1 alanine--tRNA ligase -
  P3T93_RS06050 (P3T93_06050) - 1223748..1224008 (+) 261 WP_019469413.1 IreB family regulatory phosphoprotein -
  P3T93_RS06055 (P3T93_06055) ruvX 1224012..1224440 (+) 429 WP_019469412.1 Holliday junction resolvase RuvX -
  P3T93_RS06060 (P3T93_06060) - 1224457..1224783 (+) 327 WP_019469411.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89752.03 Da        Isoelectric Point: 4.4863

>NTDB_id=801429 P3T93_RS06040 WP_040030023.1 1218363..1220750(+) (recD2) [Staphylococcus cohnii strain Dog166]
MDNPTLFNNSMIKGTVDAILFQNKDNFYTVLKVDTIESNEEFDSMPTVVGFFPEIAEGDVYTFKGQVVSHPKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQNIVNTLGENAISDILNDSSILEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQVYLGDTLNIVENKPYQLVYDVKGIGFNKADTLARNVGIQYNDDERLKAGLLYVLEEECIKQG
HTYLPTQTVLEMTQEMLSQPPNEVIEHQQLENMIQVLVEDTKLVKQESEIAIPSLYYSELKSVQNLYRNYTYTNKLKEIE
QSELQLEIGEIEQRNQVTYANSQRDALQTAINTKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYQNDDYPVVLA
APTGRASKRLAESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGEPIDITQRFHDRNFINCSTDQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNAVLQTILNPKEKETREVEFGDVVFRKGDKVLQLVNRPSDNIFNGDIGVVVGIFW
AKENALNKDVIVVDFDGNEITFVRQDLLELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFEIGLNTNGQVRMTQLCTFLKTYFNNDDRNDEDEVDDTFDSTTVLTEENIYKINPMINMGDISPYDFVEH

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=801429 P3T93_RS06040 WP_040030023.1 1218363..1220750(+) (recD2) [Staphylococcus cohnii strain Dog166]
ATGGATAACCCTACATTATTTAATAATTCAATGATTAAAGGTACTGTAGATGCTATCTTGTTTCAAAACAAAGACAATTT
TTATACTGTTTTAAAAGTAGATACGATAGAATCTAATGAAGAATTTGATTCTATGCCTACAGTTGTAGGGTTTTTTCCAG
AAATTGCTGAAGGCGATGTTTATACTTTTAAAGGACAAGTCGTTTCACATCCTAAATATGGTAAACAGTTAAAGGCTGAA
ACGTTTGAAAAAGAGTTACCTCAAACAAAAGAAGCTATAATTAGCTACTTATCTAGTGATTTATTTAAAGGCATAGGTAA
AAAAACAGCTCAAAATATTGTAAACACACTTGGAGAAAATGCAATTTCAGATATTTTAAATGACTCATCTATTTTAGAAA
AGGTACCTAGTTTGCCAAAGAAAAAGCAAAAGCAAATCGCTGAACAAATTGCGAGTAATCAAGAAACAGAGCAAATCATT
ATTCGATTACATGATTTAGGGTTTGGGCCTAAACTCGCGATGGCAATCTATCAAGTTTATTTAGGCGATACACTCAATAT
TGTAGAAAACAAACCCTATCAATTGGTTTACGATGTGAAAGGTATCGGCTTTAACAAAGCAGATACTTTAGCACGAAATG
TGGGTATTCAGTATAACGATGATGAGCGTTTAAAAGCTGGTTTATTGTATGTATTAGAAGAAGAATGCATTAAGCAAGGT
CACACATACTTGCCGACACAAACTGTATTAGAAATGACACAAGAAATGTTGTCGCAACCACCTAATGAAGTGATTGAACA
TCAACAGTTAGAAAATATGATTCAAGTCCTTGTTGAAGATACTAAATTAGTAAAACAAGAAAGTGAAATAGCAATTCCTA
GTTTATATTATTCGGAACTTAAAAGTGTTCAAAACTTATATCGTAATTACACATATACGAATAAATTAAAAGAAATAGAA
CAATCTGAATTACAATTAGAAATTGGTGAAATAGAACAACGTAATCAGGTTACATATGCAAATTCTCAAAGAGATGCGTT
ACAAACTGCAATCAATACTAAAATTATGCTGTTAACTGGCGGACCAGGAACAGGAAAGACAACTGTGATTAAAGGTATTG
TTGAATTATATGCAGAAATACATGGTTTATCTTTAGATTATGATGATTATCAAAATGATGACTATCCAGTTGTATTAGCA
GCCCCGACAGGTAGAGCTTCAAAACGATTGGCAGAATCTACGGGCTTGGAAGCTATGACGATACATCGGTTAATAGGTTG
GAACCAAGACACACAACCAGAGGATATTTTAGATAATGAGATTTCAGCGAAATTAATTATTATAGATGAAATGTCAATGG
TCGACACTTGGTTATTTCATCAATTCCTTAGTGCCGTCCCAATAGATGCTCAAGTCATATTAGTAGGTGATGAAGACCAA
TTGCCTTCTGTAGGCCCAGGTCAGGTTTTTAAAGATCTCATTGATTCTAAAGTAATCCCCAGAGTGAATCTAACTGAAGT
TTACCGACAACAAGATGGATCTAGTATCATAGAATTAGCACATAGAATGAAATTGGGTGAACCTATCGATATTACACAAA
GATTTCACGATCGTAACTTTATCAACTGTTCAACAGATCAAATACCTTCAGTAGTTGAAAAGGTGGTTTCAAGCGCTGTA
AATAAAGGTTATGATATGAGTGATATACAAGTATTAGCTCCGATGTATAAAGGTTCAGCGGGTATAAAAAAATTAAATGC
TGTATTGCAAACAATTTTAAACCCTAAAGAGAAAGAAACACGTGAAGTTGAATTCGGGGATGTTGTCTTTAGAAAAGGAG
ATAAAGTACTACAACTAGTAAATAGACCAAGTGATAATATATTTAATGGTGATATTGGAGTGGTTGTTGGTATATTTTGG
GCAAAAGAAAATGCCTTAAATAAAGATGTGATTGTCGTTGATTTTGACGGAAATGAAATTACTTTTGTAAGGCAAGATTT
ATTGGAACTAACACATGCATATTGTACGTCTATTCACAAATCACAAGGTTCCGAATTTCCAATCGTTATTATGCCTATGG
TTAAGCAATATTTTAGAATGCTGCAAAAACCAATATTATATACTGGACTAACAAGAGCTAAGCAATCACTGGTGTTTCTG
GGGGACCCACAAGCTTTCGAAATCGGTTTAAATACAAATGGTCAAGTGAGAATGACACAGCTTTGTACGTTCTTAAAAAC
GTATTTTAATAATGATGATCGAAATGATGAAGATGAAGTTGATGATACATTTGATTCGACGACTGTTTTAACAGAAGAAA
ATATATATAAAATTAATCCTATGATTAATATGGGAGATATTTCACCATATGATTTTGTTGAACATTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

AAA domain (AAA_30)

(339-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.505

99.623

0.503