Detailed information NTG0801397

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: RHS39_RS05645
• Genome accession: NZ_CP133900
• Coordinates: 1198957..1200246 (+)
• Length: 429 a.a.
• NCBI ID: WP_043043278.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain TW01
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1193957..1205246

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHS39_RS05630 (RHS39_05630)	lrp	1194456..1194950 (+)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-
RHS39_RS05635 (RHS39_05635)	-	1195103..1198189 (+)	3087	WP_025789117.1	DNA translocase FtsK	-
RHS39_RS05640 (RHS39_05640)	lolA	1198264..1198890 (+)	627	WP_017448307.1	outer membrane lipoprotein chaperone LolA	-
RHS39_RS05645 (RHS39_05645)	rarA	1198957..1200246 (+)	1290	WP_043043278.1	replication-associated recombination protein A	Machinery gene
RHS39_RS05650 (RHS39_05650)	serS	1200338..1201645 (+)	1308	WP_005495761.1	serine--tRNA ligase	-
RHS39_RS05655 (RHS39_05655)	-	1202056..1202751 (+)	696	Protein_1078	N-acetylmuramidase family protein	-
RHS39_RS05660 (RHS39_05660)	-	1202726..1203169 (+)	444	WP_025789118.1	hypothetical protein	-
RHS39_RS05665 (RHS39_05665)	-	1203304..1203570 (+)	267	WP_023585426.1	DksA/TraR family C4-type zinc finger protein	-
RHS39_RS05670 (RHS39_05670)	bioA	1203640..1204920 (-)	1281	WP_025789119.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47621.81 Da
• Isoelectric Point: 5.8544

>NTDB_id=801397 RHS39_RS05645 WP_043043278.1 1198957..1200246(+) (rarA) [Vibrio parahaemolyticus strain TW01]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGNTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEENDQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=801397 RHS39_RS05645 WP_043043278.1 1198957..1200246(+) (rarA) [Vibrio parahaemolyticus strain TW01]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTCCATCGCTTCAACAAATCGCAACAAGATGCTTT
CTTACCACATATTGAAGATGGAACCGTAACGTTTATTGGCGCAACGACAGAGAACCCATCTTTCGAACTGAACAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGGCTGGGCAATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
TGATGCTCGCATGTCGCTTAACTACCTTGAGCTTCTCTACGATATGGCAGAAGAGAATGATCAAGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCAGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGCCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCTCTTTCCGCGTGGGACTGTTTTACACGCGTTGGTCCAGCAGAGGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCTGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (169-248)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385