Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   P2W68_RS11805 Genome accession   NZ_CP119767
Coordinates   2589099..2589752 (+) Length   217 a.a.
NCBI ID   WP_232738074.1    Uniprot ID   -
Organism   Chryseobacterium arthrosphaerae strain FS91703     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2584099..2594752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2W68_RS11790 (P2W68_11790) aceA 2584414..2585694 (-) 1281 WP_276163231.1 isocitrate lyase -
  P2W68_RS11795 (P2W68_11795) aceB 2585790..2587364 (-) 1575 WP_276163232.1 malate synthase A -
  P2W68_RS11800 (P2W68_11800) - 2587491..2588966 (+) 1476 WP_241308818.1 helix-turn-helix domain-containing protein -
  P2W68_RS11805 (P2W68_11805) comF 2589099..2589752 (+) 654 WP_232738074.1 ComF family protein Machinery gene
  P2W68_RS11810 (P2W68_11810) - 2589863..2590549 (+) 687 WP_276163233.1 alpha/beta fold hydrolase -
  P2W68_RS11815 (P2W68_11815) upp 2590551..2591201 (-) 651 WP_065399113.1 uracil phosphoribosyltransferase -
  P2W68_RS11820 (P2W68_11820) der 2591357..2592667 (-) 1311 WP_276163234.1 ribosome biogenesis GTPase Der -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25334.23 Da        Isoelectric Point: 6.8735

>NTDB_id=801090 P2W68_RS11805 WP_232738074.1 2589099..2589752(+) (comF) [Chryseobacterium arthrosphaerae strain FS91703]
MILDLLFPNRCIECNRIIDPDLLVCDLCFSQIHFTHYAYSEHNPIKERCSLFFPVEHTFALMQFEEESLSRKIIHELKYR
NREITGKVLADWTTERLDFKNEKPDLMVSIPLHPKKLRERGYNQLHVFTEALSAFYTIPFDHELLRRNHYAKAQALKDKK
HRLETVNTFSVTQPVTGKHILLIDDVFTTGNTISSVAWEILNSGDNKVSVLVMAMDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=801090 P2W68_RS11805 WP_232738074.1 2589099..2589752(+) (comF) [Chryseobacterium arthrosphaerae strain FS91703]
ATGATACTAGACCTGCTTTTCCCCAACCGCTGCATTGAATGCAACAGAATCATCGATCCTGATCTCCTGGTATGTGATCT
CTGTTTCAGTCAGATCCATTTCACCCATTATGCTTATTCCGAACATAATCCGATTAAAGAAAGGTGCAGTCTGTTTTTTC
CTGTTGAACATACTTTTGCATTAATGCAGTTTGAAGAAGAAAGCCTGAGCCGGAAGATAATTCACGAACTGAAATACAGG
AACAGAGAAATAACCGGAAAGGTCCTGGCAGACTGGACCACTGAACGGCTTGATTTTAAAAATGAAAAGCCGGATCTTAT
GGTAAGTATTCCACTTCATCCTAAAAAGCTAAGGGAAAGAGGATATAATCAGCTTCATGTATTTACCGAGGCATTGTCGG
CATTTTATACCATTCCTTTTGATCATGAGCTGCTCAGAAGAAATCATTACGCCAAAGCACAGGCTTTAAAAGATAAGAAA
CACAGACTGGAAACTGTCAACACATTTTCCGTGACACAACCTGTCACCGGAAAACATATTCTGCTGATTGACGATGTTTT
TACCACAGGAAATACAATATCCTCTGTTGCATGGGAGATCCTGAATTCCGGAGATAATAAAGTGAGCGTTCTGGTGATGG
CCATGGATGTGTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

51.389

99.539

0.512