Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   L6486_RS18600 Genome accession   NZ_AP022946
Coordinates   3671620..3672399 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain J10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3666620..3677399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6486_RS18575 (BCJMU10_3678) uppS 3667369..3668145 (-) 777 WP_000971296.1 isoprenyl transferase -
  L6486_RS18580 (BCJMU10_3679) frr 3668231..3668788 (-) 558 WP_000531501.1 ribosome recycling factor -
  L6486_RS18585 (BCJMU10_3680) pyrH 3668791..3669513 (-) 723 WP_000042668.1 UMP kinase -
  L6486_RS18590 (BCJMU10_3681) tsf 3669580..3670467 (-) 888 WP_001018578.1 translation elongation factor Ts -
  L6486_RS18595 (BCJMU10_3682) rpsB 3670571..3671272 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  L6486_RS18600 (BCJMU10_3683) codY 3671620..3672399 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  L6486_RS18605 (BCJMU10_3684) hslU 3672477..3673868 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  L6486_RS18610 (BCJMU10_3685) hslV 3673891..3674433 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  L6486_RS18615 (BCJMU10_3686) xerC 3674476..3675375 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  L6486_RS18620 (BCJMU10_3687) trmFO 3675441..3676745 (-) 1305 WP_000213003.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=80103 L6486_RS18600 WP_000421290.1 3671620..3672399(-) (codY) [Bacillus cereus strain J10]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=80103 L6486_RS18600 WP_000421290.1 3671620..3672399(-) (codY) [Bacillus cereus strain J10]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment