Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RHN94_RS01390 Genome accession   NZ_CP133811
Coordinates   295853..296617 (-) Length   254 a.a.
NCBI ID   WP_001136236.1    Uniprot ID   A7ZT17
Organism   Escherichia coli strain EC2001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 290853..301617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHN94_RS01365 (RHN94_01350) yhhJ 292695..293819 (+) 1125 WP_001216257.1 ABC transporter permease -
  RHN94_RS01370 (RHN94_01355) - 293892..294167 (+) 276 WP_001259388.1 type II toxin-antitoxin system HicA family toxin -
  RHN94_RS01375 (RHN94_01360) - 294164..294523 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  RHN94_RS01380 (RHN94_01365) nikR 294643..295044 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  RHN94_RS01385 (RHN94_01370) nikE 295050..295856 (-) 807 WP_000173666.1 nickel import ATP-binding protein NikE -
  RHN94_RS01390 (RHN94_01375) amiE 295853..296617 (-) 765 WP_001136236.1 nickel import ATP-binding protein NikD Regulator
  RHN94_RS01395 (RHN94_01380) nikC 296617..297450 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  RHN94_RS01400 (RHN94_01385) nikB 297447..298391 (-) 945 WP_000947062.1 nickel ABC transporter permease subunit NikB -
  RHN94_RS01405 (RHN94_01390) nikA 298391..299965 (-) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  RHN94_RS01410 (RHN94_01395) acpT 300076..300663 (-) 588 WP_000285774.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26833.42 Da        Isoelectric Point: 6.5992

>NTDB_id=800965 RHN94_RS01390 WP_001136236.1 295853..296617(-) (amiE) [Escherichia coli strain EC2001]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=800965 RHN94_RS01390 WP_001136236.1 295853..296617(-) (amiE) [Escherichia coli strain EC2001]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398