Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RDJ20_RS26820 Genome accession   NZ_CP133755
Coordinates   5575467..5575892 (+) Length   141 a.a.
NCBI ID   WP_196745316.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain BJ86     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5570467..5580892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDJ20_RS26805 (RDJ20_26805) pilX 5571037..5571624 (+) 588 WP_033972921.1 type 4a pilus minor pilin PilX -
  RDJ20_RS26810 (RDJ20_26810) pilY1 5571636..5575121 (+) 3486 WP_033976379.1 type 4a pilus biogenesis protein PilY1 -
  RDJ20_RS26815 (RDJ20_26815) pilY2 5575123..5575470 (+) 348 WP_196745315.1 type 4a fimbrial biogenesis protein PilY2 -
  RDJ20_RS26820 (RDJ20_26820) comF 5575467..5575892 (+) 426 WP_196745316.1 type 4a pilus minor pilin PilE Machinery gene
  RDJ20_RS26825 (RDJ20_26825) ispH 5575939..5576883 (-) 945 WP_003134939.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RDJ20_RS26830 (RDJ20_26830) fkpB 5576969..5577409 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  RDJ20_RS26835 (RDJ20_26835) lspA 5577402..5577911 (-) 510 WP_025271359.1 signal peptidase II -
  RDJ20_RS26840 (RDJ20_26840) ileS 5577904..5580735 (-) 2832 WP_196745317.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15280.24 Da        Isoelectric Point: 9.6409

>NTDB_id=800933 RDJ20_RS26820 WP_196745316.1 5575467..5575892(+) (comF) [Pseudomonas aeruginosa strain BJ86]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTEDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=800933 RDJ20_RS26820 WP_196745316.1 5575467..5575892(+) (comF) [Pseudomonas aeruginosa strain BJ86]
ATGAGGACAAGACAGAAGGGTTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTATTCGCAGAACCCCGGGGTCGGCTACACCGAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAATTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383