Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   RG643_RS12740 Genome accession   NZ_CP133753
Coordinates   2709087..2709410 (-) Length   107 a.a.
NCBI ID   WP_003150898.1    Uniprot ID   A0A2R3IP58
Organism   Pseudomonas aeruginosa strain ZYPA187     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2704087..2714410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG643_RS12725 (RG643_12720) uvrB 2705474..2707486 (-) 2013 WP_003150902.1 excinuclease ABC subunit UvrB Machinery gene
  RG643_RS12730 (RG643_12725) - 2707673..2708869 (+) 1197 WP_003150900.1 amino acid aminotransferase -
  RG643_RS12740 (RG643_12735) comE1/comEA 2709087..2709410 (-) 324 WP_003150898.1 ComEA family DNA-binding protein Machinery gene
  RG643_RS12745 (RG643_12740) - 2709601..2711598 (-) 1998 WP_033977396.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  RG643_RS12750 (RG643_12745) - 2711633..2712652 (-) 1020 WP_003150897.1 glycosyltransferase family 4 protein -
  RG643_RS12755 (RG643_12750) - 2712654..2713610 (-) 957 WP_003150895.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11221.07 Da        Isoelectric Point: 6.4592

>NTDB_id=800786 RG643_RS12740 WP_003150898.1 2709087..2709410(-) (comE1/comEA) [Pseudomonas aeruginosa strain ZYPA187]
MHLIKSALFLILFACLPFSASAAPAAAKPPVVATTPTEASTAEVVNINTADEATLVRGLNGVGEVKAKAIVEYRTAHGPF
VSLDQLLEVKGVGPALLEKNRERIAIE

Nucleotide


Download         Length: 324 bp        

>NTDB_id=800786 RG643_RS12740 WP_003150898.1 2709087..2709410(-) (comE1/comEA) [Pseudomonas aeruginosa strain ZYPA187]
ATGCACCTAATCAAATCCGCCTTGTTCCTCATCCTGTTCGCCTGCCTGCCGTTTTCGGCTTCCGCCGCGCCGGCCGCCGC
CAAGCCTCCGGTGGTCGCGACAACGCCGACGGAGGCGTCGACAGCGGAGGTGGTCAATATCAATACGGCCGACGAGGCGA
CGCTGGTGCGTGGGTTGAACGGCGTCGGCGAGGTCAAGGCCAAGGCGATCGTCGAATACCGAACGGCTCATGGTCCGTTC
GTTTCGCTGGATCAGTTGCTGGAAGTGAAGGGCGTGGGACCGGCGCTGCTGGAGAAGAACCGGGAGCGGATCGCCATAGA
GTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(42-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3IP58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

43.689

96.262

0.421
  comEA/comE1 Glaesserella parasuis strain SC1401

42.308

97.196

0.411
  comEA Vibrio parahaemolyticus RIMD 2210633

42.268

90.654

0.383
  comEA Vibrio cholerae C6706

39.423

97.196

0.383
  comEA Vibrio cholerae strain A1552

39.423

97.196

0.383
  comEA Acinetobacter baylyi ADP1

54.054

69.159

0.374
  comEA Acinetobacter baumannii strain A118

29.323

100

0.364