Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | L6482_RS18745 | Genome accession | NZ_AP022934 |
| Coordinates | 3668428..3669207 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus cereus strain J7 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3630152..3708032 | 3668428..3669207 | within | 0 |
| IScluster/Tn | 3667212..3668368 | 3668428..3669207 | flank | 60 |
Gene organization within MGE regions
Location: 3630152..3708032
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6482_RS18580 (BCJMU07_3695) | - | 3630495..3632165 (-) | 1671 | WP_000823085.1 | ribonuclease J | - |
| L6482_RS18585 (BCJMU07_3697) | dapA | 3632932..3633810 (-) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| L6482_RS18590 (BCJMU07_3698) | dapG | 3633822..3635054 (-) | 1233 | WP_000692471.1 | aspartate kinase | - |
| L6482_RS18595 (BCJMU07_3699) | asd | 3635078..3636124 (-) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| L6482_RS18600 (BCJMU07_3700) | dpaB | 3636275..3636874 (-) | 600 | WP_001049480.1 | dipicolinate synthase subunit B | - |
| L6482_RS18605 (BCJMU07_3701) | dpaA | 3636871..3637773 (-) | 903 | WP_000954726.1 | dipicolinic acid synthetase subunit A | - |
| L6482_RS18610 (BCJMU07_3702) | - | 3638048..3638299 (-) | 252 | WP_001239747.1 | YlmC/YmxH family sporulation protein | - |
| L6482_RS18615 (BCJMU07_3703) | - | 3638426..3639667 (-) | 1242 | WP_000592994.1 | pitrilysin family protein | - |
| L6482_RS18620 (BCJMU07_3704) | - | 3639754..3640653 (-) | 900 | WP_000647529.1 | polysaccharide deacetylase family protein | - |
| L6482_RS18625 (BCJMU07_3705) | pnp | 3640805..3642943 (-) | 2139 | WP_000076750.1 | polyribonucleotide nucleotidyltransferase | - |
| L6482_RS18630 (BCJMU07_3706) | rpsO | 3643104..3643373 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| L6482_RS18635 (BCJMU07_3707) | ribF | 3643474..3644445 (-) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| L6482_RS18640 (BCJMU07_3708) | truB | 3644489..3645412 (-) | 924 | WP_000399345.1 | tRNA pseudouridine(55) synthase TruB | - |
| L6482_RS18645 (BCJMU07_3709) | rbfA | 3645499..3645855 (-) | 357 | WP_000776442.1 | 30S ribosome-binding factor RbfA | - |
| L6482_RS18650 (BCJMU07_3710) | - | 3645871..3646152 (-) | 282 | WP_000582364.1 | DUF503 family protein | - |
| L6482_RS18655 (BCJMU07_3711) | infB | 3646149..3648209 (-) | 2061 | WP_000036341.1 | translation initiation factor IF-2 | - |
| L6482_RS18660 (BCJMU07_3712) | - | 3648214..3648525 (-) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| L6482_RS18665 (BCJMU07_3713) | - | 3648526..3648798 (-) | 273 | WP_000071128.1 | YlxR family protein | - |
| L6482_RS18670 (BCJMU07_3714) | nusA | 3648810..3649916 (-) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| L6482_RS18675 (BCJMU07_3715) | rimP | 3649934..3650404 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| L6482_RS18680 (BCJMU07_3716) | - | 3650737..3652140 (-) | 1404 | Protein_3637 | PolC-type DNA polymerase III | - |
| L6482_RS18685 (BCJMU07_3717) | ltrA | 3652250..3654076 (-) | 1827 | WP_236800703.1 | group II intron reverse transcriptase/maturase | - |
| L6482_RS18690 (BCJMU07_3719) | - | 3654807..3657704 (-) | 2898 | Protein_3639 | PolC-type DNA polymerase III | - |
| L6482_RS18695 (BCJMU07_3720) | proS | 3657829..3659529 (-) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| L6482_RS18700 (BCJMU07_3721) | rseP | 3659639..3660895 (-) | 1257 | WP_001090229.1 | RIP metalloprotease RseP | - |
| L6482_RS18705 (BCJMU07_3722) | dxr | 3660912..3662054 (-) | 1143 | WP_000790368.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| L6482_RS18710 (BCJMU07_3723) | cdsA | 3662078..3662869 (-) | 792 | WP_000813583.1 | phosphatidate cytidylyltransferase | - |
| L6482_RS18715 (BCJMU07_3724) | uppS | 3662887..3663663 (-) | 777 | WP_000971301.1 | isoprenyl transferase | - |
| L6482_RS18720 (BCJMU07_3725) | frr | 3663749..3664306 (-) | 558 | WP_000531503.1 | ribosome recycling factor | - |
| L6482_RS18725 (BCJMU07_3726) | pyrH | 3664309..3665031 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| L6482_RS18730 (BCJMU07_3727) | tsf | 3665098..3665985 (-) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| L6482_RS18735 (BCJMU07_3728) | rpsB | 3666089..3666790 (-) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| L6482_RS18740 (BCJMU07_3730) | - | 3667212..3668368 (+) | 1157 | WP_085964323.1 | IS3 family transposase | - |
| L6482_RS18745 (BCJMU07_3731) | codY | 3668428..3669207 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| L6482_RS18750 (BCJMU07_3732) | hslU | 3669285..3670676 (-) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| L6482_RS18755 (BCJMU07_3733) | hslV | 3670699..3671241 (-) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| L6482_RS18760 (BCJMU07_3734) | xerC | 3671284..3672183 (-) | 900 | WP_001101227.1 | tyrosine recombinase XerC | - |
| L6482_RS18765 (BCJMU07_3735) | trmFO | 3672249..3673553 (-) | 1305 | WP_003295032.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| L6482_RS18770 (BCJMU07_3736) | topA | 3673604..3675682 (-) | 2079 | WP_236800705.1 | type I DNA topoisomerase | - |
| L6482_RS18775 (BCJMU07_3737) | dprA | 3675827..3676696 (-) | 870 | WP_000818038.1 | DNA-processing protein DprA | - |
| L6482_RS18780 (BCJMU07_3738) | sucD | 3676784..3677686 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| L6482_RS18785 (BCJMU07_3739) | sucC | 3677707..3678867 (-) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| L6482_RS18790 (BCJMU07_3740) | rnhB | 3679061..3679834 (-) | 774 | WP_001174721.1 | ribonuclease HII | - |
| L6482_RS18795 (BCJMU07_3741) | ylqF | 3679886..3680776 (-) | 891 | WP_000236696.1 | ribosome biogenesis GTPase YlqF | - |
| L6482_RS18800 (BCJMU07_3742) | lepB | 3680797..3681348 (-) | 552 | WP_000711857.1 | signal peptidase I | - |
| L6482_RS18805 (BCJMU07_3743) | rplS | 3681450..3681794 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| L6482_RS18810 (BCJMU07_3744) | trmD | 3681941..3682675 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| L6482_RS18815 (BCJMU07_3745) | rimM | 3682675..3683190 (-) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| L6482_RS18820 (BCJMU07_3746) | - | 3683311..3683538 (-) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| L6482_RS18825 (BCJMU07_3747) | rpsP | 3683553..3683825 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| L6482_RS18830 (BCJMU07_3748) | ffh | 3683926..3685275 (-) | 1350 | WP_000863461.1 | signal recognition particle protein | - |
| L6482_RS18835 (BCJMU07_3749) | - | 3685288..3685620 (-) | 333 | WP_000891061.1 | putative DNA-binding protein | - |
| L6482_RS18840 (BCJMU07_3750) | ftsY | 3685755..3686744 (-) | 990 | WP_000007649.1 | signal recognition particle-docking protein FtsY | - |
| L6482_RS18845 (BCJMU07_3751) | smc | 3686760..3690329 (-) | 3570 | WP_236800707.1 | chromosome segregation protein SMC | - |
| L6482_RS18850 (BCJMU07_3752) | rncS | 3690476..3691213 (-) | 738 | WP_001146873.1 | ribonuclease III | - |
| L6482_RS18855 (BCJMU07_3753) | acpP | 3691272..3691505 (-) | 234 | WP_000786062.1 | acyl carrier protein | - |
| L6482_RS18860 (BCJMU07_3754) | fabG | 3691575..3692315 (-) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| L6482_RS18865 (BCJMU07_3755) | fabD | 3692315..3693259 (-) | 945 | WP_000516949.1 | ACP S-malonyltransferase | - |
| L6482_RS18870 (BCJMU07_3756) | plsX | 3693274..3694266 (-) | 993 | WP_000684108.1 | phosphate acyltransferase PlsX | - |
| L6482_RS18875 (BCJMU07_3757) | fapR | 3694263..3694856 (-) | 594 | WP_000747352.1 | transcription factor FapR | - |
| L6482_RS18880 (BCJMU07_3758) | recG | 3694945..3696993 (-) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| L6482_RS18885 (BCJMU07_3759) | - | 3697283..3698959 (-) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| L6482_RS18890 (BCJMU07_3760) | - | 3698982..3699344 (-) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| L6482_RS18895 (BCJMU07_3761) | rpmB | 3699723..3699911 (+) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| L6482_RS18900 | spoVM | 3699985..3700065 (-) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| L6482_RS18905 (BCJMU07_3762) | - | 3700132..3700812 (-) | 681 | WP_025388434.1 | thiamine diphosphokinase | - |
| L6482_RS18910 (BCJMU07_3763) | rpe | 3700912..3701556 (-) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| L6482_RS18915 (BCJMU07_3764) | rsgA | 3701559..3702440 (-) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| L6482_RS18920 (BCJMU07_3765) | prkC | 3702709..3704682 (-) | 1974 | WP_000904759.1 | serine/threonine protein kinase PrkC | - |
| L6482_RS18925 (BCJMU07_3766) | - | 3704691..3705443 (-) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| L6482_RS18930 (BCJMU07_3767) | rlmN | 3705448..3706536 (-) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| L6482_RS18935 (BCJMU07_3768) | rsmB | 3706541..3707874 (-) | 1334 | Protein_3688 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=80053 L6482_RS18745 WP_000421288.1 3668428..3669207(-) (codY) [Bacillus cereus strain J7]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=80053 L6482_RS18745 WP_000421288.1 3668428..3669207(-) (codY) [Bacillus cereus strain J7]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCGGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAGGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCGGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAGGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |