Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PX690_RS13775 Genome accession   NZ_CP119675
Coordinates   2639219..2639998 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain 160     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2634219..2644998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX690_RS13755 (PX690_13755) trmFO 2634906..2636213 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PX690_RS13760 (PX690_13760) xerC 2636283..2637200 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  PX690_RS13765 (PX690_13765) hslV 2637216..2637761 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  PX690_RS13770 (PX690_13770) hslU 2637778..2639181 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  PX690_RS13775 (PX690_13775) codY 2639219..2639998 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PX690_RS13780 (PX690_13780) flgB 2640352..2640742 (+) 391 Protein_2727 flagellar basal body rod protein FlgB -
  PX690_RS13785 (PX690_13785) flgC 2640742..2641194 (+) 453 WP_276123182.1 flagellar basal body rod protein FlgC -
  PX690_RS13790 (PX690_13790) fliE 2641205..2641525 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  PX690_RS13795 (PX690_13795) fliF 2641568..2643178 (+) 1611 WP_062623353.1 flagellar basal-body MS-ring/collar protein FliF -
  PX690_RS13800 (PX690_13800) fliG 2643191..2644207 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  PX690_RS13805 (PX690_13805) fliH 2644200..2644955 (+) 756 WP_015388237.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=800200 PX690_RS13775 WP_003154263.1 2639219..2639998(+) (codY) [Bacillus velezensis strain 160]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=800200 PX690_RS13775 WP_003154263.1 2639219..2639998(+) (codY) [Bacillus velezensis strain 160]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATATACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471