Detailed information NTG0800112

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: RFN65_RS07215
• Genome accession: NZ_CP133703
• Coordinates: 1425812..1427077 (-)
• Length: 421 a.a.
• NCBI ID: WP_015483504.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain CP35
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1420812..1432077

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RFN65_RS07190 (RFN65_07190)	yrzK	1421055..1421225 (+)	171	WP_004399157.1	YrzK family protein	-
RFN65_RS07195 (RFN65_07195)	hisS	1421606..1422880 (+)	1275	WP_047182959.1	histidine--tRNA ligase	-
RFN65_RS07200 (RFN65_07200)	aspS	1422894..1424672 (+)	1779	WP_015384241.1	aspartate--tRNA ligase	-
RFN65_RS07210 (RFN65_07210)	tcdA	1425008..1425772 (+)	765	WP_003229763.1	ThiF family adenylyltransferase	-
RFN65_RS07215 (RFN65_07215)	rarA	1425812..1427077 (-)	1266	WP_015483504.1	replication-associated recombination protein A	Machinery gene
RFN65_RS07220 (RFN65_07220)	cymR	1427280..1427696 (+)	417	WP_003225879.1	cysteine metabolism transcriptional regulator CymR	-
RFN65_RS07225 (RFN65_07225)	iscSA	1427715..1428857 (+)	1143	WP_251218164.1	cysteine desulfurase family protein	-
RFN65_RS07230 (RFN65_07230)	mnmA	1428885..1430000 (+)	1116	WP_015483502.1	tRNA 2-thiouridine(34) synthase MnmA	-
RFN65_RS07235 (RFN65_07235)	yrrB	1430086..1430706 (+)	621	WP_206697897.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 46486.28 Da
• Isoelectric Point: 7.0446

>NTDB_id=800112 RFN65_RS07215 WP_015483504.1 1425812..1427077(-) (rarA) [Bacillus subtilis strain CP35]
MKPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
IVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALER
ALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAV
IELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHYKGAQELGRGIDYKYPHNYDNGWVEQQYLPDPLKNKQYYKP
KQTGKFESALKQVYDNLMKRK

Nucleotide

• Length: 1266 bp

>NTDB_id=800112 RFN65_RS07215 WP_015483504.1 1425812..1427077(-) (rarA) [Bacillus subtilis strain CP35]
ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTATCGGCCAGCAGCATCTGGTGGCTGAAGATAA
AATTATTGGCAGAATGGTCCAGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTGGAAAAACATCAA
TCGCAACAGCAATCGCCGGTTCAACAAGTATTGCTTTTCGAAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAA
ATTGTAGCCCAGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAGTCCACAGGCTGGATAAAGGAAAACA
GGATTTTCTATTACCCTATTTAGAAAACGGGATGATCATTTTGATCGGAGCAACCACAGCTAACCCGTATCATGCCATTA
ATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAGCCGTTAACACCTGATCTGATTAAACAGGCACTGGAACGT
GCGCTCCATGATGAGCATCGGGGCCTTGGCACCTATTCTGTATCCATTGATGATCAGGCGATGGAGCATTTTGCCCACGG
ATGCGGAGGAGATGTCCGCTCCGCTTTAAATGCGCTTGAGCTTGCCGTGTTGTCAACGAAGGAGTCAGCAGACGGTGAAA
TTCACATTACATTAGAAACCGCGGAAGAATGCTTGCAGAAAAAAAGCTTTTCTCACGATAAAGATGGTGACGCGCATTAT
GATGTACTGTCCGCTTTTCAAAAATCGATCCGCGGCTCTGATGCCAACGCTGCTCTTCACTATTTGGCTAGATTAATTGA
AGCCGGTGATCTGGAGAGCATCGCAAGACGATTGCTTGTTATCGCCTATGAAGATATCGGTTTAGCAAGCCCGCAAGCCG
GCCCTAGAGTGCTGAACGCTATTCAGACCGCTGAGCGAGTCGGGTTTCCTGAAGCGCGAATCCCGCTGGCCAACGCAGTT
ATTGAGCTTTGCCTCTCACCGAAATCAAACTCTGCCATTCTGGCAATCGATGAGGCCCTGGCAGATATCAGAGCCGGAAA
AATTGGTGATGTCCCGAAGCATTTAAAAGACGCGCATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAAT
ACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCG
AAACAGACAGGAAAATTCGAATCCGCCTTAAAGCAGGTGTACGATAATTTAATGAAAAGAAAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-416)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	99.525	100	0.995