Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   P1289_RS12760 Genome accession   NZ_CP119589
Coordinates   2698855..2701242 (+) Length   795 a.a.
NCBI ID   WP_038678681.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain H-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2693855..2706242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1289_RS12740 (P1289_12715) sal 2694100..2695731 (+) 1632 WP_081326025.1 Sal family ABC-F type ribosomal protection protein -
  P1289_RS12745 (P1289_12720) - 2695792..2696937 (+) 1146 WP_069794303.1 cysteine desulfurase family protein -
  P1289_RS12750 (P1289_12725) mnmA 2696938..2698050 (+) 1113 WP_225523053.1 tRNA 2-thiouridine(34) synthase MnmA -
  P1289_RS12755 (P1289_12730) - 2698183..2698851 (+) 669 WP_047172281.1 tetratricopeptide repeat protein -
  P1289_RS12760 (P1289_12735) recD2 2698855..2701242 (+) 2388 WP_038678681.1 ATP-dependent RecD-like DNA helicase Machinery gene
  P1289_RS12765 (P1289_12740) alaS 2701591..2704221 (+) 2631 WP_047172282.1 alanine--tRNA ligase -
  P1289_RS12770 (P1289_12745) - 2704290..2704550 (+) 261 WP_029377131.1 IreB family regulatory phosphoprotein -
  P1289_RS12775 (P1289_12750) ruvX 2704554..2704982 (+) 429 WP_047172283.1 Holliday junction resolvase RuvX -
  P1289_RS12780 (P1289_12755) - 2704999..2705331 (+) 333 WP_029377133.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89573.10 Da        Isoelectric Point: 4.5117

>NTDB_id=799837 P1289_RS12760 WP_038678681.1 2698855..2701242(+) (recD2) [Staphylococcus xylosus strain H-1]
MENPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESNETFDSMPTIVGFFPDIAEGDVYTFKGQVVTHAKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPTILEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVEKKPYQLVYDVKGIGFNKADTLARNVGIQFNDAERLKAGLLYVLEEECIKQG
HTYLPTNNVLEMTQDMLSQPPGELIETQQLEQVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFSYTNKLKEIE
QSDLLLEIGEIEERNKVTYADSQREALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAELHGLSLDYDDYQNDDYPVVLG
APTGRASKRLSESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGETIDITQRFHDRNFINCTTEQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQDILNPKEQDTREIEFGDIVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFVRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCAFLKAYFNNEEETETADVSKSFDSDIILSEENIFKINPMINMGEFSPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=799837 P1289_RS12760 WP_038678681.1 2698855..2701242(+) (recD2) [Staphylococcus xylosus strain H-1]
ATGGAAAACCCTACACTATTTAACAATTCAATGATTAAAGGGACCGTTGATGCGATTTTGTTTCAAAACAAAGAGAATTT
TTATACGGTTTTAAAAGTTGATACGATTGAATCCAATGAGACATTTGATTCAATGCCTACAATTGTAGGGTTTTTCCCAG
ATATTGCAGAAGGTGACGTCTATACATTTAAAGGCCAAGTAGTTACGCATGCAAAATATGGCAAACAATTAAAGGCTGAA
ACATTTGAAAAAGAGTTACCACAAACGAAAGAAGCAATTATAAGTTATTTATCTAGTGATCTTTTTAAAGGAATAGGTAA
AAAAACGGCTCAAAGTATTGTAAATAAATTAGGTGAAAATGCAATTAGCGACATATTAAATGATCCAACTATATTAGAAA
AAGTACCTAGTTTACCTAAAAAGAAACAAAAACAAATTGCTGAACAAATCGCAAGTAATCAAGAAACGGAACAAATAATC
ATTCGCCTCCATGATCTAGGTTTTGGGCCAAAGTTAGCAATGGCTATATACCAAGCATATTTAGGAGAAACACTTAACGT
AGTTGAAAAGAAACCTTATCAACTTGTATATGATGTCAAAGGCATCGGTTTTAATAAGGCAGACACATTAGCGCGTAATG
TCGGCATTCAATTTAACGATGCAGAACGTCTTAAAGCAGGGTTACTTTATGTGTTAGAAGAAGAATGTATAAAACAAGGT
CATACGTATTTACCTACTAATAATGTACTAGAGATGACTCAAGATATGCTATCACAACCACCAGGTGAACTAATAGAAAC
ACAGCAGCTTGAACAAGTTTTACAAGATTTAGTTAATGACACTAAATTAATTCAACAAGAAAATGAAGTTGCGATTCCAA
GTCTATACTATTCAGAATTGAAAAGCGTTCAAAATTTATACCGTAATTTTTCTTATACAAATAAACTAAAAGAAATTGAG
CAATCTGATTTGCTGCTTGAAATAGGAGAAATTGAGGAACGCAATAAAGTGACATATGCAGATTCTCAAAGAGAAGCCTT
GCAAACAGCGATTAATTCTAAAATAATGTTACTGACTGGTGGCCCAGGTACAGGAAAAACAACTGTCATTAAAGGAATTG
TTGAACTTTATGCAGAGTTGCATGGTCTATCATTAGATTATGACGATTATCAAAATGATGATTATCCAGTAGTTCTAGGT
GCGCCAACTGGACGTGCATCGAAGCGTTTGTCAGAGTCAACTGGTTTAGAGGCTATGACGATACATCGCTTAATAGGTTG
GAATCAAGATACACAACCAGAAGATATTTTAGATAATGAAATTTCTGCAAAACTTATTATTATTGATGAAATGTCTATGG
TTGATACATGGTTATTCCATCAATTTTTGAGTGCTGTACCTATTGATGCGCAAGTTATACTAGTCGGTGATGAAGATCAG
CTGCCATCTGTTGGACCAGGCCAAGTATTTAAAGATTTAATTGATTCGAAAGTAATTCCTCGTGTAAATTTAACTGAAGT
TTACCGACAACAAGATGGTTCAAGTATTATAGAATTAGCGCATAGGATGAAACTAGGAGAAACTATTGATATTACACAGA
GATTTCATGACCGTAATTTTATAAACTGTACAACAGAACAGATACCTTCAGTTGTTGAAAAAGTGGTGTCAAGTGCAGTG
AATAAAGGTTATGATATGAGTGATATTCAAGTATTAGCTCCGATGTATAAAGGGTCTGCAGGTATTAAGAAACTAAATAC
AGTACTGCAAGATATCTTGAATCCCAAAGAACAAGATACTAGAGAAATTGAGTTTGGTGATATTGTCTTTAGAAAAGGTG
ATAAGGTATTACAACTAGTTAACCGACCAAGCGATAATATATTTAATGGTGATATCGGGGTCATTGTAGGCATCTTCTGG
GCTAAAGAAAATGCATTAAACAAAGATGTATTGGTAGTTGATTTTGAAGGTAATGAGATTACATTTGTTCGTCAAGACTT
AATGGAGTTGACGCATGCCTATTGTACTTCAATCCATAAGTCACAAGGATCAGAATTTCCGATCGTGATTATGCCAATGG
TTAAACAGTACTTTAGAATGCTTCAAAAACCTATATTATATACAGGTTTAACACGTGCTAAACAGTCACTTGTGTTCTTA
GGAGATCCACAAGCATTTGATATTGGTCTAAAGACTCATGGCCAAGTGAGAATGACACAATTGTGTGCTTTTCTTAAAGC
GTATTTTAATAATGAGGAAGAAACTGAAACTGCTGATGTCAGTAAATCCTTTGATTCAGATATTATATTGTCTGAAGAAA
ATATATTTAAAATAAATCCAATGATTAATATGGGTGAATTTTCCCCGTATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.126

99.874

0.501