Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   RFN60_RS06125 Genome accession   NZ_CP133653
Coordinates   1189009..1189926 (+) Length   305 a.a.
NCBI ID   WP_015252359.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP38     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1184009..1194926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS06110 (RFN60_06110) trpS 1184589..1185581 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  RFN60_RS06115 (RFN60_06115) oppA 1186325..1187962 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  RFN60_RS06120 (RFN60_06120) oppB 1188070..1189005 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  RFN60_RS06125 (RFN60_06125) amiD 1189009..1189926 (+) 918 WP_015252359.1 oligopeptide ABC transporter permease OppC Regulator
  RFN60_RS06130 (RFN60_06130) oppD 1189931..1191007 (+) 1077 WP_015252358.1 oligopeptide ABC transporter ATP-binding protein OppD -
  RFN60_RS06135 (RFN60_06135) oppF 1191009..1191926 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  RFN60_RS06140 (RFN60_06140) yjbB 1192033..1193250 (+) 1218 WP_080019554.1 MFS transporter -
  RFN60_RS06145 (RFN60_06145) yjbC 1193414..1193992 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  RFN60_RS06150 (RFN60_06150) spx 1194173..1194568 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33635.15 Da        Isoelectric Point: 10.2873

>NTDB_id=799792 RFN60_RS06125 WP_015252359.1 1189009..1189926(+) (amiD) [Bacillus subtilis strain CP38]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAILDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=799792 RFN60_RS06125 WP_015252359.1 1189009..1189926(+) (amiD) [Bacillus subtilis strain CP38]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGAGACATTTTCGTCCGTACATGGGTAGGGGCTCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTATTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364