Detailed information NTG0799747

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: RDV59_RS10110
• Genome accession: NZ_CP133476
• Coordinates: 2160183..2162687 (+)
• Length: 834 a.a.
• NCBI ID: WP_038676786.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain LMG 11489
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2155183..2167687

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV59_RS10090 (RDV59_10090)	-	2157402..2157944 (-)	543	WP_037602641.1	CvpA family protein	-
RDV59_RS10095 (RDV59_10095)	zapA	2157941..2158255 (-)	315	WP_004183554.1	cell division protein ZapA	-
RDV59_RS10100 (RDV59_10100)	rnhC	2158572..2159462 (+)	891	WP_038676784.1	ribonuclease HIII	-
RDV59_RS10105 (RDV59_10105)	lepB	2159481..2160122 (+)	642	WP_002884233.1	signal peptidase I	-
RDV59_RS10110 (RDV59_10110)	recD/recD2/recDB	2160183..2162687 (+)	2505	WP_038676786.1	ATP-dependent RecD-like DNA helicase	Machinery gene
RDV59_RS10115 (RDV59_10115)	-	2162739..2163065 (-)	327	WP_037611255.1	AzlD domain-containing protein	-
RDV59_RS10120 (RDV59_10120)	-	2163052..2163744 (-)	693	WP_038676788.1	AzlC family ABC transporter permease	-
RDV59_RS10125 (RDV59_10125)	tsaD	2163796..2164809 (-)	1014	WP_038676790.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
RDV59_RS10130 (RDV59_10130)	rimI	2164809..2165264 (-)	456	WP_038676793.1	ribosomal protein S18-alanine N-acetyltransferase	-
RDV59_RS10135 (RDV59_10135)	tsaB	2165224..2165910 (-)	687	WP_038676795.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
RDV59_RS10140 (RDV59_10140)	-	2166171..2166401 (+)	231	WP_022495963.1	DNA-dependent RNA polymerase subunit epsilon	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 94006.28 Da
• Isoelectric Point: 4.4583

>NTDB_id=799747 RDV59_RS10110 WP_038676786.1 2160183..2162687(+) (recD/recD2/recDB) [Streptococcus salivarius strain LMG 11489]
MQEFYFSGTIERVIFENASNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGEDYTFWGQLTNHPKYGEQLQMTRYERS
KPSASGLIKYFASDNFKGIGKKTAERIVEIYGEDPIDKILEDPSKLEQIPNLSKVNREAFVAKLKINYGTEQILSKLSSY
GLTPKAASQIFNQYKEESLNLIEEHPYLLVEEVQGIGFKIADQLAERLGIASDAPERLRAALIHCLLETSMEEGDTYIEA
KALLERTIILLESARQIELDPALVAKELTNLIQEDKVQNIETKIFDNTLYFAEQGIYTHLTRIMKDQPDISAEDKIQASL
EEVEEELGITYDKVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDLKKSDLPIILAAPTGRAARRMNEL
TQLPSATIHRHLGLNSEDDFKTLEDYLDCDLIIIDEFSMVDTWLANQLFESISDSTQVIIVGDQDQLPSVGPGQVLADLL
QIDNLPKVSLTKIFRQSEDSTIVTLASQMRQGQLPADFTEKKADRSYFEANANHIPQMVPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPQEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEITAFDYAVHNEG
AKRNTYLIQRFEQTYTQAVDKSVEKIVKNEATGASNQTKTKNNDPSETLENKDFSENINPSPDLVNTYSQPVDKSVNKPV
QTEENYRLTEENWSTLDPMIGLSEDDIAAFFNNN

Nucleotide

• Length: 2505 bp

>NTDB_id=799747 RDV59_RS10110 WP_038676786.1 2160183..2162687(+) (recD/recD2/recDB) [Streptococcus salivarius strain LMG 11489]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAACGCGTCATTTTCGAAAACGCTAGTAATTTTTTCCGTATTCTACTCTT
AGAAATTGACGAAACAGACAGTGATTTTGAGGACTATGAAATCATTGTCACAGGAACCATGGGAGATGTCATGGAAGGCG
AAGATTATACTTTCTGGGGTCAGCTAACCAATCATCCAAAATATGGTGAACAACTCCAAATGACGCGCTACGAACGGTCA
AAACCTTCTGCTAGCGGTCTTATCAAGTATTTCGCCAGCGACAATTTTAAGGGGATTGGTAAGAAAACAGCTGAGCGTAT
TGTCGAGATTTATGGTGAAGACCCTATTGACAAGATTCTCGAGGATCCGAGCAAATTAGAACAGATTCCTAATCTGTCCA
AGGTCAATCGAGAAGCCTTCGTTGCAAAGTTAAAAATCAACTATGGAACCGAACAAATCTTGTCCAAACTTTCCAGCTAT
GGACTCACACCAAAAGCTGCCTCACAAATTTTCAACCAATATAAGGAAGAATCGCTCAACCTTATCGAAGAACACCCTTA
TCTCTTGGTAGAAGAAGTTCAAGGAATCGGATTTAAAATAGCCGACCAACTAGCCGAACGCTTAGGGATTGCTAGTGATG
CTCCTGAGCGTTTACGAGCTGCCTTGATTCATTGTCTGCTAGAAACTAGCATGGAAGAAGGCGACACCTATATCGAAGCC
AAAGCCTTGCTTGAACGAACTATCATCCTTTTGGAAAGTGCTCGTCAGATTGAACTTGACCCCGCCTTAGTCGCGAAGGA
ATTAACCAATCTCATCCAAGAGGATAAAGTGCAAAATATAGAGACTAAAATCTTTGATAATACCCTATATTTTGCGGAAC
AGGGCATCTATACCCACCTAACTCGTATCATGAAAGACCAACCTGACATCAGTGCAGAGGACAAAATCCAAGCAAGTCTT
GAAGAGGTGGAAGAGGAACTTGGTATTACTTATGATAAGGTTCAAAAAGATGCCATTATCAAAGCCCTACAAAGCAAGGT
CTTCATCCTGACAGGTGGTCCCGGGACAGGTAAAACCACCGTTATTAACGGAATCATTAAAACTTATGCCGACCTTCATG
GTCTAGATCTCAAAAAGTCTGATTTGCCTATTATTTTAGCGGCACCAACAGGACGGGCTGCTCGTCGGATGAACGAACTC
ACCCAACTCCCTAGCGCCACAATCCATAGACATTTGGGCCTCAATAGCGAGGACGATTTCAAGACCTTGGAGGACTATCT
CGATTGCGACTTGATTATCATCGATGAGTTTTCTATGGTTGATACTTGGTTGGCCAATCAACTTTTTGAAAGTATCTCTG
ATTCAACCCAAGTCATCATTGTGGGTGACCAAGACCAACTGCCTTCCGTAGGCCCTGGCCAGGTCTTGGCTGACCTTTTG
CAGATTGATAACTTGCCTAAGGTTTCTCTGACCAAAATTTTCAGACAATCCGAGGATTCCACCATCGTTACTTTAGCTAG
TCAGATGCGCCAAGGCCAACTACCCGCTGATTTCACAGAGAAAAAGGCTGACCGCTCTTACTTTGAGGCCAATGCCAACC
ATATTCCACAGATGGTTCCTAAAATAGTCTCTGCCGCTATAAAGAGCGGGATAGCTGCTCAGGATGTGCAGATTCTAGCT
CCCATGTATCGAGGACAGGCTGGTATTAACAATCTCAATACCATTATGCAGGACCTACTTAATCCTCAAGAAAAGGCCAA
TCAGTTTGCCTTTAATGACATTTTCTTCCGTAAGAACGACAAGATTCTCCATCTGGTCAACGATACCGAACTCAATGTCT
TCAATGGCGACATCGGCATCATTACTGATCTCATCCCTGGTAAATATACTGAAAGCAAGCAGGACGAAATTTACATGTCC
TTTGATGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCCATGTCAATCCACAAATC
TCAAGGGAGTGAGTTCCCAGTCGTTATCCTTCCCATCACACGCCAAAGTGGACGTATGCTACAACGTAACCTCATCTACA
CTGCTATCACACGCGCCAAGAGTAAGCTAGTCATGTTAGGGGAAATCACAGCTTTCGATTATGCTGTTCACAACGAGGGG
GCTAAACGAAATACTTATCTCATCCAACGTTTTGAACAAACTTATACACAAGCTGTTGATAAGTCTGTCGAAAAGATTGT
TAAAAACGAGGCAACAGGCGCCTCCAATCAAACAAAAACGAAAAACAACGACCCCTCAGAAACCCTTGAAAACAAAGACT
TTTCGGAAAATATCAATCCATCCCCAGATCTTGTTAACACTTATTCACAACCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACAGAAGAAAACTATCGTTTAACTGAAGAAAATTGGTCAACTCTAGATCCAATGATTGGTCTCAGTGAAGACGATAT
TGCTGCCTTTTTTAACAATAACTAA

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-638)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

• Helix-hairpin-helix containing domain (HHH_RecD2) (147-237)

• AAA domain (AAA_30) (331-523)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	45.333	89.928	0.408