Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   RDV59_RS09670 Genome accession   NZ_CP133476
Coordinates   2064729..2065478 (+) Length   249 a.a.
NCBI ID   WP_014634988.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 2059729..2070478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS09640 (RDV59_09640) - 2060838..2061218 (-) 381 WP_038676698.1 hypothetical protein -
  RDV59_RS09645 (RDV59_09645) - 2061343..2061708 (-) 366 WP_013991116.1 hypothetical protein -
  RDV59_RS09650 (RDV59_09650) - 2061926..2062222 (-) 297 WP_038676700.1 bacteriocin immunity protein -
  RDV59_RS09655 (RDV59_09655) - 2062591..2062983 (-) 393 WP_003094909.1 hypothetical protein -
  RDV59_RS09660 (RDV59_09660) - 2063019..2063153 (-) 135 Protein_1863 Blp family class II bacteriocin -
  RDV59_RS09665 (RDV59_09665) comE/blpR 2063407..2064147 (+) 741 WP_014634987.1 response regulator transcription factor Regulator
  RDV59_RS09670 (RDV59_09670) comD/comD3 2064729..2065478 (+) 750 WP_014634988.1 sensor histidine kinase Regulator
  RDV59_RS09675 (RDV59_09675) - 2065565..2065966 (-) 402 WP_038676702.1 hypothetical protein -
  RDV59_RS09680 (RDV59_09680) - 2066295..2066462 (-) 168 WP_002884432.1 hypothetical protein -
  RDV59_RS09685 (RDV59_09685) - 2066939..2067169 (-) 231 WP_021143664.1 bacteriocin class II family protein -
  RDV59_RS09690 (RDV59_09690) - 2067329..2069074 (-) 1746 WP_038676705.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 28630.89 Da        Isoelectric Point: 5.6824

>NTDB_id=799738 RDV59_RS09670 WP_014634988.1 2064729..2065478(+) (comD/comD3) [Streptococcus salivarius strain LMG 11489]
MVIYLVLFFIMLIFLDRNIRATIQSQLDFQKDIQLSHLKNYNKQIENLYQSVRSFRHDYANILTTLKLGIEQNDMAIVKE
VYDSVLKDSDKHLKSKTFDLTRLINIGDNTIKSLLASKFLEAEENNIDVSLDIPETIKLEGMEMVDFITVISIFLDNAME
ASIQSDIPKMHIGYFNHGNKQLFIVQNSTREEFISITSLFERGVSSKEGNRGIGLANVRNILDNYQNISLKTESMTFAFT
QELNISKKA

Nucleotide


Download         Length: 750 bp        

>NTDB_id=799738 RDV59_RS09670 WP_014634988.1 2064729..2065478(+) (comD/comD3) [Streptococcus salivarius strain LMG 11489]
GTGGTTATTTATCTAGTCTTGTTCTTTATCATGCTTATCTTCTTAGATAGAAATATCCGAGCAACAATACAAAGTCAGTT
GGACTTTCAAAAAGATATTCAACTATCGCATCTTAAGAATTATAACAAACAGATTGAAAACCTCTATCAGTCGGTTCGAA
GTTTTCGTCATGATTATGCCAATATTTTAACAACACTCAAACTTGGTATCGAACAAAATGATATGGCTATTGTGAAAGAA
GTCTACGACTCAGTTCTAAAAGATTCCGATAAGCATTTAAAATCGAAAACATTTGATTTAACTCGCTTAATAAACATAGG
AGATAACACTATTAAAAGCCTACTTGCATCTAAGTTCCTAGAGGCAGAAGAAAATAACATTGATGTCTCTCTAGATATTC
CTGAAACTATCAAACTTGAGGGTATGGAGATGGTCGATTTTATTACTGTCATATCTATCTTTCTAGACAATGCGATGGAA
GCATCGATTCAGTCTGACATACCAAAAATGCATATTGGCTACTTCAACCATGGTAATAAACAGCTCTTTATTGTCCAAAA
CTCGACCCGGGAAGAATTCATTTCGATTACCTCACTTTTTGAGAGAGGTGTCTCAAGTAAAGAAGGTAATCGAGGTATAG
GTTTGGCCAACGTTAGGAATATCCTAGACAACTATCAAAATATTTCTTTAAAAACTGAAAGTATGACTTTTGCATTTACA
CAGGAACTTAATATATCGAAAAAAGCTTGA

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(142-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

41.152

97.59

0.402
  comD/blpH Streptococcus mutans UA159

39.184

98.394

0.386
  comD/comD2 Streptococcus equinus JB1

39.506

97.59

0.386