Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RDV59_RS09565 Genome accession   NZ_CP133476
Coordinates   2044101..2044844 (-) Length   247 a.a.
NCBI ID   WP_022495903.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2039101..2049844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS09535 (RDV59_09535) - 2039377..2040321 (-) 945 WP_038676684.1 TIGR01212 family radical SAM protein -
  RDV59_RS09540 (RDV59_09540) sepM 2040405..2041520 (-) 1116 WP_371212477.1 SepM family pheromone-processing serine protease Regulator
  RDV59_RS09545 (RDV59_09545) coaD 2041459..2041956 (-) 498 WP_038676687.1 pantetheine-phosphate adenylyltransferase -
  RDV59_RS09550 (RDV59_09550) rsmD 2041989..2042537 (-) 549 WP_230955163.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RDV59_RS09555 (RDV59_09555) trxB 2042678..2043631 (-) 954 WP_255296714.1 thioredoxin-disulfide reductase -
  RDV59_RS09560 (RDV59_09560) - 2043664..2043888 (-) 225 WP_022495904.1 DUF4059 family protein -
  RDV59_RS09565 (RDV59_09565) amiE 2044101..2044844 (-) 744 WP_022495903.1 amino acid ABC transporter ATP-binding protein Regulator
  RDV59_RS09570 (RDV59_09570) - 2044844..2045590 (-) 747 WP_118189357.1 amino acid ABC transporter permease -
  RDV59_RS09575 (RDV59_09575) - 2046188..2047018 (-) 831 WP_014634974.1 transporter substrate-binding domain-containing protein -
  RDV59_RS09580 (RDV59_09580) - 2047233..2048123 (-) 891 WP_014634975.1 hypothetical protein -
  RDV59_RS09585 (RDV59_09585) dinB 2048224..2049333 (-) 1110 WP_014634976.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27696.87 Da        Isoelectric Point: 7.4642

>NTDB_id=799736 RDV59_RS09565 WP_022495903.1 2044101..2044844(-) (amiE) [Streptococcus salivarius strain LMG 11489]
MISIKNLTKEFSGQKVLDGINFDIKKGEVVALVGASGAGKSTILRSLNYLEQPDSGTITIDDFKVDFKTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDEEATKIAKEELAKVGLSNRENHYPRHLSGGQKQRVALARALAMKPDV
LLLDEPTSALDPELVGEVEKSIADAAKSGQTMILVSHDMNFVYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=799736 RDV59_RS09565 WP_022495903.1 2044101..2044844(-) (amiE) [Streptococcus salivarius strain LMG 11489]
ATGATTAGCATCAAAAATTTGACCAAGGAATTTTCAGGCCAAAAGGTTCTTGATGGCATTAACTTCGATATTAAAAAAGG
TGAAGTTGTAGCGCTTGTCGGTGCCTCTGGTGCAGGTAAGTCAACTATCCTTCGTAGCTTGAACTATTTGGAACAACCTG
ATTCTGGCACTATTACCATTGATGATTTTAAAGTAGACTTCAAGACTATCACTAAAGAACAAATTCTTACGCTTCGCCGT
AAGTTGGCCATGGTTTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTTAAGAT
TGTTAAGAAACTTTCTGACGAAGAAGCTACTAAGATTGCCAAAGAAGAGCTTGCTAAGGTTGGACTTTCAAATCGCGAAA
ATCACTACCCACGTCACTTGTCAGGTGGTCAAAAGCAACGTGTGGCCTTGGCCCGTGCCCTTGCTATGAAGCCAGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGCTGATGCAGCTAA
GTCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTGTTTATCAAGTGGCTGACAAGGTACTCTTCCTTGAAA
AAGGGCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCGAAAGAAGAACGAACAAAAGAATTTTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.712

100

0.36