Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RDV59_RS09470 Genome accession   NZ_CP133476
Coordinates   2026404..2027189 (-) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2021404..2032189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS09450 (RDV59_09450) - 2021904..2022785 (-) 882 WP_038676670.1 glycosyltransferase family 2 protein -
  RDV59_RS09455 (RDV59_09455) - 2022789..2023997 (-) 1209 WP_038676671.1 glycosyltransferase -
  RDV59_RS09460 (RDV59_09460) - 2024192..2025631 (-) 1440 WP_022496408.1 6-phospho-beta-glucosidase -
  RDV59_RS09465 (RDV59_09465) - 2025787..2026338 (-) 552 WP_004183314.1 cysteine hydrolase family protein -
  RDV59_RS09470 (RDV59_09470) codY 2026404..2027189 (-) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RDV59_RS09475 (RDV59_09475) - 2027456..2028670 (-) 1215 WP_002884715.1 pyridoxal phosphate-dependent aminotransferase -
  RDV59_RS09480 (RDV59_09480) - 2029030..2029482 (+) 453 WP_002884397.1 universal stress protein -
  RDV59_RS09485 (RDV59_09485) - 2029561..2030313 (-) 753 WP_014634961.1 hypothetical protein -
  RDV59_RS09490 (RDV59_09490) pflA 2030383..2031183 (-) 801 WP_002884535.1 pyruvate formate-lyase-activating protein -
  RDV59_RS09495 (RDV59_09495) - 2031370..2032098 (-) 729 WP_022495913.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=799734 RDV59_RS09470 WP_002884784.1 2026404..2027189(-) (codY) [Streptococcus salivarius strain LMG 11489]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=799734 RDV59_RS09470 WP_002884784.1 2026404..2027189(-) (codY) [Streptococcus salivarius strain LMG 11489]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGACAGCTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAATTGGCGGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGTGTGGAAGAGTTTTTTGAAGCCAAACAACTTCCAGAAGAATACACA
CGTGGAATCAGCCGTGTTTATGACACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCTGTGGAATCAAA
AGATGACTTCCCAGATGGTTTGACTACAATTGCCCCTATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGACCATGATTTTGTGGATGAAGATCTTATCTTGGTTGAGATTGCCTCTACAGTAGTTGGGTTGCAGTTGTTGAAC
CTTCAAACAGAGAACTTGGAAGAAACAATTCGTAAACAAACAGCTATTAACATGGCTATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTGGAAGGTCGCTTGACAGCGTCTGTTATCGCTGACCGTA
TCGGAATTACACGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGATAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502