Detailed information NTG0799733

Bioinformatically predicted

Overview

• Name: clpE
• Type: Regulator
• Locus tag: RDV59_RS09320
• Genome accession: NZ_CP133476
• Coordinates: 1996567..1998672 (-)
• Length: 701 a.a.
• NCBI ID: WP_038676649.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain LMG 11489
• Function: repress competence development (at the early growth phase) (predicted from homology) Competence regulation

Genomic Context

Location: 1991567..2003672

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV59_RS09280 (RDV59_09280)	pptB	1991912..1992946 (-)	1035	WP_371212501.1	ABC transporter permease	Regulator
RDV59_RS09285 (RDV59_09285)	pptA	1992946..1993677 (-)	732	WP_038676648.1	ABC transporter ATP-binding protein	Regulator
RDV59_RS09290 (RDV59_09290)	-	1993742..1994161 (+)	420	WP_002891660.1	HIT family protein	-
RDV59_RS09295 (RDV59_09295)	-	1994158..1994457 (+)	300	WP_002884229.1	hypothetical protein	-
RDV59_RS09300 (RDV59_09300)	-	1994637..1994804 (-)	168	WP_002884708.1	hypothetical protein	-
RDV59_RS09305 (RDV59_09305)	-	1994822..1995286 (-)	465	WP_172855709.1	hypothetical protein	-
RDV59_RS09310 (RDV59_09310)	-	1995380..1995988 (-)	609	WP_002884297.1	DUF4230 domain-containing protein	-
RDV59_RS09315 (RDV59_09315)	-	1996006..1996131 (-)	126	WP_002884447.1	hypothetical protein	-
RDV59_RS09320 (RDV59_09320)	clpE	1996567..1998672 (-)	2106	WP_038676649.1	AAA family ATPase	Regulator
RDV59_RS09325 (RDV59_09325)	-	1999405..2000496 (-)	1092	WP_038676651.1	nucleotidyltransferase	-
RDV59_RS09330 (RDV59_09330)	-	2000503..2001243 (-)	741	WP_013991077.1	class I SAM-dependent methyltransferase	-
RDV59_RS09335 (RDV59_09335)	rsfS	2001562..2001915 (-)	354	WP_014632696.1	ribosome silencing factor	-
RDV59_RS09340 (RDV59_09340)	yqeK	2001939..2002529 (-)	591	WP_038676655.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	-
RDV59_RS09345 (RDV59_09345)	-	2002526..2003158 (-)	633	WP_002884372.1	nicotinate-nucleotide adenylyltransferase	-
RDV59_RS09350 (RDV59_09350)	yhbY	2003266..2003583 (-)	318	WP_002884193.1	ribosome assembly RNA-binding protein YhbY	-

Sequence

Protein

• Length: 701 a.a.
• Molecular weight: 77347.30 Da
• Isoelectric Point: 4.7718

>NTDB_id=799733 RDV59_RS09320 WP_038676649.1 1996567..1998672(-) (clpE) [Streptococcus salivarius strain LMG 11489]
MNNNFNNMDDLFNQLMGNMGGYRSENRRYMINGREVTPEEFAIYRQTGQLPGNEGEAVNPTQHQGKGPKQDGIIAKLGRN
LTEEAREGKLDPVIGRNKEIQEACEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGSFEENIQNLVNEVKEAGNIILFFDEIHQILGAGSTGDGQGSKGLADILKPALSRGELTVIGATTQDEYRNTILK
NAALARRFNEVKVNAPSAEDTFKILQGIRDLYEKHHNVILPDDVLKAAVDFSVQYIPQRSLPDKAIDLVDVTAAHLAAQH
PVTDVNAVEHEIEEEKAKQEAAAAKEDYEAALNAKVRIEELEKKIANHTADLKVTATVNDVAESVERMTGIPVSQMGATD
IERLKDMGHRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGTKDAIIRLDMS
EYSDRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVI
IATSNAGFGYEANLTEDADKPELMDRLKPYFRPEFLNRFNAVIEFSHLSKEDLSKIVDLMLVEVNKTLSKKDIDLAVSEA
AKEYMTEEGYDEVMGVRPLRRVVEQQIRDKVTDFHLDNLDAKHLEADMEDGILVIKEKDAK

Nucleotide

• Length: 2106 bp

>NTDB_id=799733 RDV59_RS09320 WP_038676649.1 1996567..1998672(-) (clpE) [Streptococcus salivarius strain LMG 11489]
ATGAACAACAACTTTAACAATATGGATGATCTTTTCAATCAATTGATGGGTAACATGGGTGGTTACCGTTCAGAAAACCG
TCGCTACATGATTAACGGTCGTGAAGTGACACCTGAAGAATTTGCTATCTACCGTCAAACAGGTCAATTGCCTGGTAATG
AAGGTGAAGCAGTGAACCCAACTCAACATCAAGGTAAAGGACCTAAACAAGATGGTATTATTGCTAAACTTGGTCGTAAC
TTGACTGAAGAAGCTCGTGAAGGTAAATTGGATCCTGTTATCGGACGTAACAAAGAAATCCAAGAAGCTTGCGAAATCTT
GGCTCGTCGTACCAAGAATAACCCAGTCCTTGTCGGGGATGCTGGGGTTGGTAAAACAGCCGTAGTTGAAGGTTTGGCTC
AAGCCATCGTCAATGGTGATGTCCCAGCTGCTATCAAGAATAAAGAAATCATTTCAATTGATATTTCTGGACTTGAAGCT
GGTACTCAATACCGTGGTAGCTTTGAAGAAAACATTCAAAACTTGGTAAACGAAGTCAAAGAAGCTGGAAACATTATCCT
CTTCTTCGATGAAATCCACCAAATTCTTGGTGCCGGAAGCACTGGTGATGGTCAAGGGTCTAAAGGTCTTGCTGATATCT
TGAAACCAGCTCTTTCACGTGGTGAATTGACAGTGATTGGTGCAACAACTCAAGATGAATATCGTAACACTATCTTGAAG
AACGCTGCCCTAGCTCGTCGTTTCAACGAAGTTAAGGTCAATGCTCCTTCTGCTGAAGATACTTTCAAGATTCTCCAAGG
TATCCGTGATCTTTATGAAAAACACCACAATGTTATCTTGCCAGATGATGTTTTGAAGGCAGCGGTAGATTTCTCTGTAC
AATACATTCCACAACGTAGCTTGCCAGATAAGGCTATCGACCTTGTCGATGTAACAGCTGCTCACTTGGCTGCTCAACAC
CCAGTGACTGATGTGAATGCTGTTGAACATGAAATTGAAGAAGAAAAAGCTAAACAAGAAGCTGCAGCTGCCAAAGAAGA
CTACGAAGCAGCTCTAAACGCTAAGGTTCGTATTGAAGAACTTGAAAAGAAAATTGCTAACCATACAGCAGACCTTAAAG
TCACTGCAACTGTTAACGATGTGGCTGAATCTGTAGAACGTATGACTGGTATTCCAGTATCGCAAATGGGAGCAACTGAT
ATCGAACGTTTGAAAGATATGGGCCACCGTTTGCAAACTAAAGTTATCGGTCAAGATAAAGCCGTTGAAGCAGTGGCACG
TGCCATCCGTCGTAACCGTGCAGGATTTGACGAAGGTAACCGTCCAATTGGTAGCTTCCTCTTTGTAGGACCTACTGGTG
TTGGTAAAACTGAGTTGGCTAAACAATTGGCTCTTGATATGTTCGGAACTAAAGATGCTATTATCCGTTTGGACATGTCA
GAATATAGCGACCGCACAGCCGTTTCTAAATTGATTGGTACAACAGCTGGTTATGTTGGTTATGATGACAATAGCAATAC
TTTGACAGAACGTGTTCGCCGTAACCCATACTCAATCGTTCTTCTCGACGAAATTGAAAAGGCTGACCCTCAAGTCATCA
CCCTTCTCCTCCAAGTTTTGGACGATGGTCGTTTGACAGATGGTCAAGGTAACACTGTAAACTTCAAGAATACTGTGATT
ATTGCAACTTCAAACGCAGGCTTTGGTTACGAAGCTAACTTGACAGAAGATGCTGATAAACCAGAACTTATGGATCGTTT
GAAACCTTACTTCCGTCCAGAATTCCTTAACCGCTTCAATGCTGTCATCGAATTCTCACACTTGAGCAAAGAAGATCTTT
CTAAGATTGTAGACCTTATGTTGGTTGAAGTTAACAAGACGCTTTCTAAGAAAGACATTGACTTGGCAGTTAGCGAAGCT
GCTAAAGAATACATGACTGAAGAAGGCTACGATGAAGTCATGGGTGTTCGTCCACTCCGTCGTGTGGTTGAACAACAAAT
CCGTGACAAAGTCACAGACTTCCACTTGGATAACCTTGATGCTAAACACCTAGAAGCTGATATGGAAGATGGTATCTTGG
TTATCAAAGAAAAAGATGCTAAATAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (441-601)

• AAA lid domain (AAA_lid_9) (257-351)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (608-678)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpE	Streptococcus mutans UA159	46.505	100	0.465
clpC	Lactococcus lactis subsp. cremoris KW2	48.848	92.867	0.454
clpE	Streptococcus pneumoniae Rx1	48.523	91.726	0.445
clpE	Streptococcus pneumoniae TIGR4	48.523	91.726	0.445
clpE	Streptococcus pneumoniae R6	48.523	91.726	0.445
clpE	Streptococcus pneumoniae D39	48.523	91.726	0.445
clpC	Bacillus subtilis subsp. subtilis str. 168	45.723	91.726	0.419
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.089	92.867	0.391
clpC	Streptococcus thermophilus LMD-9	43.274	88.017	0.381
clpC	Streptococcus pneumoniae Rx1	43.322	87.589	0.379
clpC	Streptococcus pneumoniae D39	43.322	87.589	0.379
clpC	Streptococcus pneumoniae TIGR4	43.322	87.589	0.379
clpC	Streptococcus thermophilus LMG 18311	42.811	88.302	0.378
clpC	Streptococcus mutans UA159	42.173	89.301	0.377