Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RDV59_RS00670 Genome accession   NZ_CP133476
Coordinates   118547..119815 (-) Length   422 a.a.
NCBI ID   WP_002885641.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 113547..124815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS00635 (RDV59_00635) - 114842..115351 (-) 510 WP_014712806.1 helix-turn-helix domain-containing protein -
  RDV59_RS00640 (RDV59_00640) - 115559..115753 (+) 195 WP_072903616.1 hypothetical protein -
  RDV59_RS00645 (RDV59_00645) - 115787..116764 (+) 978 WP_038676890.1 replication initiation protein -
  RDV59_RS00650 (RDV59_00650) - 116776..116964 (+) 189 WP_002903611.1 DUF3173 domain-containing protein -
  RDV59_RS00655 (RDV59_00655) - 116966..118105 (+) 1140 WP_014635152.1 site-specific integrase -
  RDV59_RS00670 (RDV59_00670) rarA 118547..119815 (-) 1269 WP_002885641.1 replication-associated recombination protein A Machinery gene
  RDV59_RS00675 (RDV59_00675) rpmB 119985..120173 (+) 189 WP_002885786.1 50S ribosomal protein L28 -
  RDV59_RS00680 (RDV59_00680) - 120300..120566 (+) 267 WP_002885737.1 IreB family regulatory phosphoprotein -
  RDV59_RS00685 (RDV59_00685) ruvX 120566..120985 (+) 420 WP_022496180.1 Holliday junction resolvase RuvX -
  RDV59_RS00690 (RDV59_00690) - 121091..121396 (+) 306 WP_002887079.1 DUF1292 domain-containing protein -
  RDV59_RS00695 (RDV59_00695) - 121609..123255 (+) 1647 WP_038676894.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46582.02 Da        Isoelectric Point: 5.8803

>NTDB_id=799648 RDV59_RS00670 WP_002885641.1 118547..119815(-) (rarA) [Streptococcus salivarius strain LMG 11489]
MPDNLALRMRPRTISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
GVLEDKERGFDFDVQLDEDALDFIATATNGDLRSAYNSLDLAVMSTPASEDGLRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKVGFPEARILIANVV
VDLALSPKSNSAYMAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=799648 RDV59_RS00670 WP_002885641.1 118547..119815(-) (rarA) [Streptococcus salivarius strain LMG 11489]
ATGCCAGATAATCTTGCTCTACGCATGCGTCCACGTACAATTTCAGAGGTGATTGGTCAGAAGCATTTGGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAAGCGAATATGCTGTCGTCAATGATTCTCTACGGGCCACCAGGAATCGGGAAGACCT
CAATAGCTAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACCTTTAATGCTACTGTTGATAGCAAGAAACGCCTA
CAGGAAATTGCGGAAGAGGCTAAATTTTCAGGTGGCTTAGTTCTGCTTCTAGATGAGATTCATCGTTTGGATAAAGCTAA
ACAAGACTTTTTATTGCCACTCTTAGAGAATGGTAATATTATCATGATTGGGGCTACAACGGAGAATCCGTTTTTTTCTG
TCACACCAGCCATCCGTAGTCGTGTACAAATATTTGAGTTGGAACCACTCTCTAACGAGGATATTAAGGAAGCTATACTA
GGTGTTCTAGAGGACAAGGAGCGTGGCTTTGACTTTGATGTCCAGTTAGATGAGGATGCTCTAGATTTTATTGCTACGGC
TACTAATGGTGATTTACGTTCGGCTTATAATTCCTTAGATTTAGCTGTCATGTCGACGCCAGCTTCAGAAGATGGGCTTC
GCCATATTACTTTAGATACAGTGGAAAATAGTTTACAACGTAGCTATATCACCATGGATAAAGACGGTGATGGACACTAT
GATGTACTTTCTGCTTTGCAAAAATCTATTCGAGGCTCTGATGTTAATGCCAGTCTTCACTATGCAGCACGTTTGGTTGA
AGCAGGAGATCTCCCTAGTCTAGCACGACGCTTGACTGTGATTGCGTACGAGGATATTGGTTTAGCTAATCCTGATGCGC
AAGTTCACACGGTTACAGCTTTGGAAGCTGCACAGAAAGTAGGTTTCCCAGAGGCGCGTATTTTGATTGCCAATGTAGTT
GTTGACTTAGCTTTATCTCCTAAGTCGAATTCGGCTTATATGGCTATGGATGCTGCCTTGGCAGACCTTAGAAAATCAGG
GAATTTACCTATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTACAAGT
ATCCCCATGCTTATCCTGAAAAGTGGGTCAAACAACAATATCTTCCGGATAAATTAAGAGGTGTGAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGGATCGATAAGTTATCTAGGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.143

99.289

0.597