Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   P2G42_RS23500 Genome accession   NZ_CP119531
Coordinates   4884743..4886176 (+) Length   477 a.a.
NCBI ID   WP_131048464.1    Uniprot ID   A0AAJ5QVE0
Organism   Klebsiella electrica strain Rd210413     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4879743..4891176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2G42_RS23470 (P2G42_23475) - 4880318..4881295 (+) 978 WP_131048466.1 calcium/sodium antiporter -
  P2G42_RS23475 (P2G42_23480) kdsD 4881292..4882296 (+) 1005 WP_407081244.1 arabinose-5-phosphate isomerase KdsD -
  P2G42_RS23480 (P2G42_23485) kdsC 4882311..4882877 (+) 567 WP_131048465.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  P2G42_RS23485 (P2G42_23490) lptC 4882874..4883449 (+) 576 WP_100684858.1 LPS export ABC transporter periplasmic protein LptC -
  P2G42_RS23490 (P2G42_23495) lptA 4883418..4883963 (+) 546 WP_100684859.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  P2G42_RS23495 (P2G42_23500) lptB 4883970..4884695 (+) 726 WP_004206203.1 LPS export ABC transporter ATP-binding protein -
  P2G42_RS23500 (P2G42_23505) rpoN/rpoN1 4884743..4886176 (+) 1434 WP_131048464.1 RNA polymerase factor sigma-54 Machinery gene
  P2G42_RS23505 (P2G42_23510) hpf 4886199..4886486 (+) 288 WP_004868168.1 ribosome hibernation promoting factor -
  P2G42_RS23510 (P2G42_23515) ptsN 4886559..4887047 (+) 489 WP_015585655.1 PTS IIA-like nitrogen regulatory protein PtsN -
  P2G42_RS23515 (P2G42_23520) rapZ 4887093..4887947 (+) 855 WP_004868172.1 RNase adapter RapZ -
  P2G42_RS23520 (P2G42_23525) npr 4887944..4888216 (+) 273 WP_004868176.1 PTS phosphocarrier protein NPr -
  P2G42_RS23525 (P2G42_23530) mtgA 4888278..4889003 (-) 726 WP_285237592.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  P2G42_RS23530 (P2G42_23535) elbB 4889000..4889653 (-) 654 WP_285237593.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54017.96 Da        Isoelectric Point: 4.3873

>NTDB_id=799561 P2G42_RS23500 WP_131048464.1 4884743..4886176(+) (rpoN/rpoN1) [Klebsiella electrica strain Rd210413]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDLHDEVETKEVEDRESLDTVDALEQKDMPE
ELPLDASWDEIYTAGTPSGNGVDYQDDELPVYQGETTQSLQDYLMWQVELTPFTDTDRAIATSIVDAVDDTGYLTIRLED
IVESIDDDEIGLEEVEAVLKRIQRFDPVGVAAKDLRDCLLVQLSQYAKETPWLEEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKVGGRWVVELNSDSIPRLKINQHYAAMGNSARNDADSQFIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQSFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=799561 P2G42_RS23500 WP_131048464.1 4884743..4886176(+) (rpoN/rpoN1) [Klebsiella electrica strain Rd210413]
ATGAAGCAAGGTTTGCAATTAAGGCTAAGCCAACAGCTTGCCATGACGCCACAACTGCAACAGGCTATTCGCTTGCTGCA
GCTGTCCACGTTAGAACTCCAGCAAGAACTCCAGCAGGCGCTGGAGAGTAATCCGCTGCTTGAGCAAACCGATCTTCACG
ATGAGGTAGAAACCAAAGAGGTTGAGGACCGCGAATCGCTGGACACCGTCGACGCTCTTGAACAAAAAGATATGCCGGAA
GAGCTGCCGCTCGACGCCAGCTGGGATGAAATCTACACCGCCGGCACGCCGTCCGGAAACGGCGTTGATTACCAGGACGA
CGAGCTGCCTGTTTATCAAGGCGAAACGACCCAAAGCCTGCAGGATTACCTGATGTGGCAGGTTGAACTGACGCCGTTTA
CCGACACCGATCGCGCGATTGCCACATCGATTGTCGATGCCGTCGATGACACCGGCTACCTCACCATTCGGCTGGAAGAT
ATTGTCGAGAGTATCGACGATGACGAAATTGGTCTCGAAGAAGTTGAAGCGGTACTTAAGCGCATCCAGCGCTTTGACCC
GGTCGGCGTCGCGGCAAAAGATCTGCGCGACTGTCTGCTGGTTCAGCTTTCACAATATGCCAAAGAGACGCCGTGGCTGG
AAGAAGCCCGGCTTATCATCAGCGATCATCTCGATCTGCTCGCCAACCACGATTTCCGCTCCCTGATGCGCGTCACCCGA
CTGAAAGAAGAGGTGCTGAAAGAGGCGGTTAATCTGATCCAGTCGCTCGATCCGCGCCCCGGTCAGTCGATCCAGACCGG
CGAGCCGGAATACGTCATTCCCGACGTACTGGTACGTAAGGTCGGCGGCCGCTGGGTCGTGGAGCTTAACTCCGACAGCA
TCCCACGCCTGAAGATCAACCAGCATTATGCGGCCATGGGCAACAGCGCGCGCAATGATGCAGACAGCCAGTTTATCCGC
AGCAACCTGCAGGAGGCTCGCTGGCTAATCAAGAGTCTGGAAAGCCGCAATGATACGCTGCTGCGCGTTAGCCGCTGCAT
CGTTGAACAGCAGCAGTCCTTCTTCGAACAAGGAGAGGAGTTCATGAAACCGATGGTACTGGCCGATATCGCCCAGGCCG
TCGAAATGCATGAATCCACTATTTCACGCGTGACCACCCAAAAATATCTGCACAGTCCGCGCGGTATTTTTGAGCTGAAA
TATTTCTTTTCCAGCCACGTCAATACAGAGGGCGGCGGCGAGGCATCGTCGACGGCCATTCGGGCGCTGGTGAAGAAGTT
AATCGCCGCGGAGAATCCCGCGAAGCCGTTGAGTGACAGTAAGCTGACCACCCTCCTGTCTGAACAGGGTATTATGGTGG
CACGTCGTACCGTCGCTAAGTACCGAGAGTCTTTATCCATTCCGCCATCTAACCAGCGTAAACAACTGGTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.257

100

0.48