Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RDV58_RS02720 Genome accession   NZ_CP133475
Coordinates   536741..537526 (+) Length   261 a.a.
NCBI ID   WP_002263472.1    Uniprot ID   P59388
Organism   Streptococcus mutans strain LMG 14558     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 531741..542526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS02700 (RDV58_02700) - 532495..533880 (+) 1386 WP_002268948.1 Cof-type HAD-IIB family hydrolase -
  RDV58_RS02705 (RDV58_02705) - 534158..534607 (-) 450 WP_002263469.1 universal stress protein -
  RDV58_RS02710 (RDV58_02710) - 534705..535241 (-) 537 WP_002279914.1 biotin transporter BioY -
  RDV58_RS02715 (RDV58_02715) - 535418..536632 (+) 1215 WP_002263471.1 pyridoxal phosphate-dependent aminotransferase -
  RDV58_RS02720 (RDV58_02720) codY 536741..537526 (+) 786 WP_002263472.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RDV58_RS02725 (RDV58_02725) - 537528..538079 (+) 552 WP_002263473.1 cysteine hydrolase family protein -
  RDV58_RS02730 (RDV58_02730) aspS 538337..540088 (+) 1752 WP_397610535.1 aspartate--tRNA ligase -
  RDV58_RS02735 (RDV58_02735) gatC 540215..540517 (+) 303 WP_002263475.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  RDV58_RS02740 (RDV58_02740) gatA 540517..541983 (+) 1467 WP_002263829.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28970.13 Da        Isoelectric Point: 4.5032

>NTDB_id=799561 RDV58_RS02720 WP_002263472.1 536741..537526(+) (codY) [Streptococcus mutans strain LMG 14558]
MANLLSKTRRITSILQRSVESLQSDLPYNTIADQLAEIIDCNACIIDGSGIILGYAMKYKTNTDRVEEFFQAKKLPDDYV
KSASRIYDTEANLSVENDLTIFPIESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDKEFNDDDLILIEISSTVVGIQLLN
LQTENLEETIRKQTAINMAINTLSYSEMKAVAAILNELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKDYS

Nucleotide


Download         Length: 786 bp        

>NTDB_id=799561 RDV58_RS02720 WP_002263472.1 536741..537526(+) (codY) [Streptococcus mutans strain LMG 14558]
ATGGCTAATTTATTATCGAAAACGCGACGTATTACATCCATTTTACAACGCTCGGTTGAGAGCCTTCAAAGTGATTTGCC
TTATAATACGATTGCAGATCAATTGGCTGAAATTATTGATTGTAATGCTTGTATTATTGATGGTAGTGGTATTATTCTCG
GCTATGCTATGAAGTATAAAACCAATACAGATCGTGTTGAAGAATTTTTCCAAGCTAAAAAATTACCTGATGATTATGTA
AAATCGGCCAGCCGTATTTATGATACAGAAGCCAATCTGTCGGTTGAAAATGATTTGACCATTTTTCCAATTGAATCAAA
AGATATCTATCCTGATGGCTTGACGACTATTGCTCCCATCTATGGCGGCGGTATGCGTCTTGGTTCTCTTATTATCTGGC
GTAATGATAAAGAATTCAATGATGACGATTTGATTCTAATTGAGATTTCTTCTACTGTTGTTGGAATTCAATTATTGAAC
TTGCAGACAGAAAATCTTGAAGAAACAATTCGTAAGCAGACTGCTATTAATATGGCGATTAATACCTTGTCTTATTCAGA
AATGAAAGCTGTCGCAGCTATTCTCAATGAATTAGATGGCAATGAAGGTCGCTTGACCGCATCGGTTATTGCTGATCGTA
TCGGTATTACACGTAGCGTGATTGTTAATGCTCTTAGAAAGTTAGAAAGTGCCGGTATTATTGAAAGTCGTTCCTTAGGT
ATGAAAGGTACTTATCTCAAAGTTATTAATGAAGGTATTTTTGATAAATTAAAGGACTATAGTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P59388

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.37

98.467

0.644
  codY Bacillus subtilis subsp. subtilis str. 168

48.047

98.084

0.471