Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RDV58_RS00310 Genome accession   NZ_CP133475
Coordinates   55421..56686 (+) Length   421 a.a.
NCBI ID   WP_002279982.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 50421..61686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS00275 (RDV58_00275) - 51507..51701 (+) 195 WP_002312123.1 hypothetical protein -
  RDV58_RS00280 (RDV58_00280) - 51729..52025 (-) 297 WP_002269405.1 LacI family DNA-binding transcriptional regulator -
  RDV58_RS00285 (RDV58_00285) - 52087..52830 (-) 744 WP_002279984.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  RDV58_RS00290 (RDV58_00290) prmA 52831..53784 (-) 954 WP_002279983.1 50S ribosomal protein L11 methyltransferase -
  RDV58_RS00295 (RDV58_00295) - 54013..54309 (-) 297 WP_002268478.1 LlsX family protein -
  RDV58_RS00300 (RDV58_00300) - 54322..54792 (-) 471 WP_002262363.1 DUF3013 family protein -
  RDV58_RS00305 (RDV58_00305) - 54940..55431 (+) 492 WP_002266873.1 GNAT family N-acetyltransferase -
  RDV58_RS00310 (RDV58_00310) rarA 55421..56686 (+) 1266 WP_002279982.1 replication-associated recombination protein A Machinery gene
  RDV58_RS00325 (RDV58_00325) - 57093..59009 (-) 1917 WP_002312133.1 heavy metal translocating P-type ATPase -
  RDV58_RS00330 (RDV58_00330) - 59108..59314 (+) 207 Protein_58 MerR family DNA-binding transcriptional regulator -
  RDV58_RS00335 (RDV58_00335) - 60039..60719 (-) 681 WP_002267363.1 4'-phosphopantetheinyl transferase superfamily protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46423.80 Da        Isoelectric Point: 6.5830

>NTDB_id=799520 RDV58_RS00310 WP_002279982.1 55421..56686(+) (rarA) [Streptococcus mutans strain LMG 14558]
MPNNLALRMRPRDISEVIGQKHLVGQGKIISRMVTANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATTDTKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGQIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAMQ
AALTDTERGFDFEVKLDDDALDFIAQATNGDLRSAYNSLDLAIMSTQPDDNGSRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTIIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKAIADLHKSGTIPIPRHLRDGHYTGSKELGNAQDYLYPHAYPEKWVKQQYLPDKLKGAHYFTA
NETGKYERALGANKDKIDKLS

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=799520 RDV58_RS00310 WP_002279982.1 55421..56686(+) (rarA) [Streptococcus mutans strain LMG 14558]
ATGCCAAATAACCTCGCACTTCGTATGCGCCCTCGAGATATCTCTGAAGTTATCGGACAAAAGCATCTAGTCGGTCAAGG
CAAGATTATTTCGCGAATGGTCACTGCTAACCGTCTGTCTTCCATGATTCTTTATGGCCCTCCCGGAATTGGAAAAACCT
CAATCGCTTCTGCCATCGCTGGTACAACCAAATTTGCCTTTCGTACCTTCAATGCAACAACCGACACTAAAAAACGCCTG
CAGGAAATTGCTGAAGAAGCTAAATTTTCAGGTGGTTTGGTCTTGCTCCTAGATGAAATTCATCGTCTAGATAAAACTAA
GCAAGATTTTCTTCTCCCCTTGTTGGAAAACGGACAAATTATCATGATTGGCGCAACCACTGAAAATCCCTTTTTCTCTG
TCACCCCTGCCATTCGCTCGCGTGTTCAGATTTTTGAGTTAGAGCCATTATCAAATGAGGATATCAAAAAAGCTATGCAA
GCAGCTCTGACAGATACAGAGCGCGGCTTTGATTTTGAAGTCAAATTAGATGATGATGCTCTTGACTTCATTGCGCAAGC
CACCAATGGCGACTTGCGCTCTGCCTATAATTCTCTTGATTTAGCCATCATGTCCACCCAGCCAGATGACAATGGTAGTC
GCCACATCACCTTAGACACTGTTGAAAACAGCCTACAGCGCAGCTACATTACCATGGACAAGGATGGTGATGGCCACTAT
GATGTCTTGTCCGCCTTACAAAAATCTATTCGCGGTTCAGATGTCAATGCCAGCCTTCACTATGCTGCCAGATTAATCGA
AGCTGGTGATCTGCCAAGTCTAGCTAGACGTTTAACCATTATTGCTTACGAAGATATCGGCTTAGCCAATCCTGATGCAC
AGATTCATACAGTGACAGCGCTGGAAGCAGCCCAAAAAATTGGTTTTCCTGAAGCCCGCATTTTAATTGCCAATGTTGTT
ATTGATTTAGCACTCTCACCTAAGTCTAATTCCGCTTATGTTGCTATGGACAAGGCCATTGCAGATCTTCATAAAAGCGG
CACGATCCCTATTCCTCGCCACTTACGTGATGGTCATTACACTGGCAGTAAAGAATTGGGCAATGCCCAAGATTATCTCT
ACCCGCATGCCTATCCGGAAAAATGGGTTAAGCAGCAATATTTACCAGACAAACTCAAAGGAGCTCACTATTTTACTGCC
AATGAAACAGGTAAATACGAACGGGCACTGGGGGCTAACAAAGACAAGATTGATAAACTTTCATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-414)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.135

98.812

0.584