Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   RDV54_RS05360 Genome accession   NZ_CP133471
Coordinates   1128090..1130426 (-) Length   778 a.a.
NCBI ID   WP_001035049.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1123090..1135426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS05340 (RDV54_05340) serS 1123438..1124712 (+) 1275 WP_000884220.1 serine--tRNA ligase -
  RDV54_RS05345 (RDV54_05345) - 1124736..1125635 (-) 900 WP_000735981.1 TDT family transporter -
  RDV54_RS05350 (RDV54_05350) - 1125745..1126293 (-) 549 WP_004256949.1 carboxymuconolactone decarboxylase family protein -
  RDV54_RS05355 (RDV54_05355) - 1126425..1127747 (-) 1323 WP_000891462.1 alanine/glycine:cation symporter family protein -
  RDV54_RS05360 (RDV54_05360) mutS/mutS2 1128090..1130426 (-) 2337 WP_001035049.1 endonuclease MutS2 Machinery gene
  RDV54_RS05365 (RDV54_05365) - 1130529..1131077 (-) 549 WP_000622765.1 CvpA family protein -
  RDV54_RS05370 (RDV54_05370) zapA 1131074..1131376 (-) 303 WP_000002019.1 cell division protein ZapA -
  RDV54_RS05375 (RDV54_05375) rnhC 1131463..1132344 (+) 882 WP_000146882.1 ribonuclease HIII -
  RDV54_RS05380 (RDV54_05380) lepB 1132348..1132962 (+) 615 WP_004239180.1 signal peptidase I -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87582.53 Da        Isoelectric Point: 6.9855

>NTDB_id=799454 RDV54_RS05360 WP_001035049.1 1128090..1130426(-) (mutS/mutS2) [Streptococcus mitis strain LMG 14557]
MNKKILETLEFNKVKALFEPHLLTEQGLEQLRQLAPTAKADKIKQAFAEMKEMQALFVEQPHFTILATKEIAGVCKRLEM
GADLNIEEFLLLKRVLLSSRELQSFYDNLENVSLEELALWFEKLHDFPQLQGNLQAFNDAGFIENFASEELARIRRKIHD
SESQVRDVLQDLLKQKAQMLTEGIVASRNGRQVLPVKNTYRNKIAGVVHDISASGNTVYIEPREVVKLSEEIASLRADER
YEMLRILQEISERVRPHAAEIANDAWIIGHLDLIRAKVRFIQERQAVVPQLSENQEIQLLHVCHPLVKNAVANDVHFGQD
LTAIVITGPNTGGKTIMLKTLGLTQVMAQSGLPILADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVN
QHSLLLLDELGAGTDPQEGAALAMAILEDLRLRQVKTMATTHYPELKAYGIETAFVQNASMEFDTATLRPTYRFMQGVPG
RSNAFEIAKRLGLSEVIVGDASQQVNQDNDVNRIIEQLEEQTLESRKRLDNIREVEQENLKMNRALKKLYNELNREKETE
LNKAREQAAEIVDMALSESDQILKNLHSKSQLKPHEIIEAKAKLKKLAPEKVDLSKNKVLQKAKKKRAPKVGDDIVVLSY
GQRGTLISQLKDGRWEAQVGLIKMTLEEKEFDLVQAQQEKQVKKKQVNVVKRTSGRGPQARLDLRGKRYEEAMNELDAFI
DQALLNNMAQVDIIHGIGTGVIREGVTKYLQRNKHVKSFGYAPQNAGGSGATIVTFKG

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=799454 RDV54_RS05360 WP_001035049.1 1128090..1130426(-) (mutS/mutS2) [Streptococcus mitis strain LMG 14557]
ATGAATAAGAAAATATTAGAAACATTAGAGTTCAATAAGGTCAAGGCCTTGTTTGAGCCTCATTTGTTGACCGAGCAGGG
CTTGGAGCAATTGAGACAGCTGGCTCCGACTGCTAAAGCGGATAAAATTAAACAGGCGTTTGCTGAGATGAAGGAAATGC
AGGCTCTTTTTGTTGAGCAACCGCATTTTACCATTCTTGCAACCAAGGAAATCGCAGGAGTCTGCAAGCGGTTGGAGATG
GGAGCGGACCTCAATATCGAGGAGTTCCTACTTTTGAAGCGCGTGCTTCTTTCTAGCAGAGAACTACAAAGTTTTTATGA
TAATCTGGAAAATGTCAGCTTGGAAGAATTAGCCCTTTGGTTTGAAAAATTACACGATTTTCCGCAATTACAAGGAAATC
TCCAAGCCTTTAATGATGCAGGTTTCATTGAAAATTTTGCCAGTGAAGAATTGGCGCGAATCCGTCGAAAAATCCATGAT
AGCGAGAGTCAGGTCCGTGATGTTTTGCAGGACCTGCTCAAGCAAAAAGCGCAGATGTTGACGGAAGGTATTGTTGCCAG
CAGAAATGGCCGTCAGGTTTTACCAGTTAAAAACACCTACCGCAATAAGATTGCAGGTGTCGTTCATGATATTTCTGCCA
GCGGAAACACCGTCTATATCGAACCCCGTGAGGTGGTCAAACTGAGCGAAGAGATTGCTAGTTTGCGAGCAGATGAGCGC
TATGAAATGCTTCGCATTCTCCAAGAAATTTCTGAACGTGTCCGCCCTCATGCGGCTGAGATTGCCAATGATGCTTGGAT
TATCGGCCATCTGGACTTGATTCGTGCCAAGGTTCGTTTTATCCAAGAAAGGCAAGCAGTCGTTCCTCAGCTGTCAGAAA
ATCAGGAGATTCAACTGCTCCATGTCTGCCACCCTTTGGTCAAAAATGCCGTCGCAAATGATGTCCATTTTGGTCAAGAT
TTAACAGCCATTGTCATTACAGGTCCCAATACAGGTGGGAAGACCATCATGCTTAAAACTCTGGGCTTGACACAGGTTAT
GGCCCAGTCAGGTTTGCCGATTTTGGCAGATAAGGGAAGCCGTGTTGGTATTTTTGAAGAAATCTTTGCCGATATTGGAG
ATGAGCAATCTATTGAACAGAGCTTGTCTACCTTCTCTAGCCACATGACCAATATTGTGGATATTCTTGGCAAGGTTAAC
CAACATTCACTTTTACTCTTGGATGAGTTGGGAGCTGGTACAGACCCTCAAGAAGGAGCTGCTCTTGCCATGGCTATTCT
GGAAGACCTTCGCCTGCGTCAAGTCAAGACAATGGCGACCACCCACTATCCAGAACTCAAGGCCTATGGTATCGAGACAG
CCTTTGTGCAAAATGCCAGCATGGAGTTTGATACTGCGACTCTACGCCCGACCTATCGCTTTATGCAGGGTGTGCCTGGT
CGAAGCAATGCTTTTGAAATTGCTAAACGTTTAGGATTATCTGAAGTTATCGTAGGAGATGCCAGTCAGCAGGTCAATCA
GGACAATGATGTCAACCGAATCATTGAACAACTGGAAGAGCAGACGCTAGAAAGTCGCAAACGCTTGGACAATATCCGTG
AGGTGGAGCAAGAAAATCTTAAGATGAACCGTGCTCTCAAAAAGCTCTACAATGAGCTCAATCGTGAAAAGGAAACCGAG
CTTAACAAGGCGCGTGAACAGGCTGCTGAGATTGTGGACATGGCCCTCAGTGAGAGTGACCAGATTCTCAAAAATCTCCA
CAGTAAATCTCAACTCAAGCCCCACGAAATCATTGAAGCCAAAGCCAAGTTGAAAAAATTGGCTCCTGAAAAAGTAGATT
TGTCTAAAAACAAGGTTCTTCAAAAGGCCAAGAAAAAACGAGCTCCAAAGGTGGGAGATGATATCGTGGTTCTCAGTTAC
GGTCAGCGTGGTACCTTGATCAGTCAACTCAAGGACGGTCGCTGGGAAGCCCAAGTTGGCTTGATTAAGATGACTTTAGA
AGAGAAAGAATTTGACCTTGTTCAAGCCCAGCAAGAAAAGCAAGTCAAGAAGAAACAGGTCAATGTTGTGAAACGAACTT
CTGGTCGTGGACCACAAGCCAGACTGGACCTTCGAGGCAAACGTTATGAAGAGGCCATGAATGAGCTAGATGCCTTTATC
GACCAAGCCTTGCTTAATAATATGGCTCAAGTTGATATCATCCATGGTATCGGAACAGGTGTCATCCGTGAAGGTGTCAC
TAAATACCTACAAAGAAACAAACATGTCAAGAGTTTCGGCTATGCCCCGCAAAATGCTGGAGGCAGTGGTGCGACCATTG
TGACGTTTAAAGGATAG

Domains

Predicted by InterProScan.

MutS domain V (MutS_V)

(324-506)

Smr domain (Smr)

(702-777)

MutS2 and Smr-associated SH3 domain (MSSS)

(631-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

40.455

100

0.411