Detailed information NTG0799402

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: RDV54_RS00425
• Genome accession: NZ_CP133471
• Coordinates: 67570..68841 (-)
• Length: 423 a.a.
• NCBI ID: WP_001113232.1
• Uniprot ID: A0A2I1UDS1
• Organism: Streptococcus mitis strain LMG 14557
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 62570..73841

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV54_RS00400 (RDV54_00400)	-	63700..64989 (+)	1290	WP_001062781.1	membrane protein	-
RDV54_RS00405 (RDV54_00405)	-	64999..66087 (+)	1089	WP_001055024.1	AI-2E family transporter	-
RDV54_RS00415 (RDV54_00415)	-	66363..66878 (-)	516	WP_000672740.1	DUF308 domain-containing protein	-
RDV54_RS00425 (RDV54_00425)	rarA	67570..68841 (-)	1272	WP_001113232.1	replication-associated recombination protein A	Machinery gene
RDV54_RS00430 (RDV54_00430)	-	68957..69427 (+)	471	WP_000257127.1	DUF3013 family protein	-
RDV54_RS00435 (RDV54_00435)	-	69446..70513 (+)	1068	WP_000719487.1	M50 family metallopeptidase	-
RDV54_RS00440 (RDV54_00440)	-	70515..70943 (+)	429	WP_000402088.1	NUDIX hydrolase	-
RDV54_RS00445 (RDV54_00445)	prmA	71081..72031 (+)	951	WP_000451175.1	50S ribosomal protein L11 methyltransferase	-
RDV54_RS00450 (RDV54_00450)	-	72033..72776 (+)	744	WP_001188174.1	16S rRNA (uracil(1498)-N(3))-methyltransferase	-

Sequence

Protein

• Length: 423 a.a.
• Molecular weight: 46969.48 Da
• Isoelectric Point: 6.2424

>NTDB_id=799402 RDV54_RS00425 WP_001113232.1 67570..68841(-) (rarA) [Streptococcus mitis strain LMG 14557]
MPDNLALRMRPKTIDQVIGQEHLVGQGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPVELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide

• Length: 1272 bp

>NTDB_id=799402 RDV54_RS00425 WP_001113232.1 67570..68841(-) (rarA) [Streptococcus mitis strain LMG 14557]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAACATCTGGTCGGACAAGG
AAAAATCATCCGCCGCATGGTAGAAGCCAACCGCCTGTCCTCCATGATTCTCTATGGCCCTCCGGGAATCGGCAAGACCA
GTATTGCCTCTGCCATCGCAGGGACTACTAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAACGACTG
CAAGAAATTGCGGAAGAGGCTAAATTCTCTGGTGGTCTCGTCCTATTACTAGACGAGATTCATAGACTAGATAAAACCAA
GCAAGACTTCCTCTTACCTCTCTTGGAAAGTGGTCTGGTCATCATGATTGGCGCTACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAGCGTGGTTTTGATTTTCCAGTAGAACTAGATGAGGATGCGCTGGATTTCATTGCTACCTC
TACAAACGGAGACCTTCGCTCTGCCTTCAACTCACTTGACTTGGCTGTTCTTTCTACTCCCGAAAATGACAAGGGCATCC
GCCATATCACTCTAGACATCATGGAAAATAGCCTGCAGCGAAGCTACATCACTATGGATAAGGATGGAGATGGCCACTAC
GATGTCCTCTCAGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTTGATGCCAGTCTTCACTATGCTGCCCGCTTGATTGA
GGCTGGTGATTTGCCAAGTCTCGCTCGTCGTTTGACTGTTATCGCTTATGAAGATATCGGTTTGGCCAATCCTGAAGCCC
AGATTCACACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGTTTCCCAGAAGCCCGTATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCGAAATCCAACTCAGCTTATGTGGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTACCCTGGAAATTGGGTCAAGCAAGACTATCTACCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (173-251)

• ATPase family associated with various cellular activities (AAA) (AAA) (42-144)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-416)

3D structure

• AlphaFold DB: A0A2I1UDS1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	57.995	99.054	0.574