Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   P1T45_RS04515 Genome accession   NZ_CP119427
Coordinates   805399..806268 (+) Length   289 a.a.
NCBI ID   WP_004234319.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP45     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 800399..811268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS04485 (P1T45_04490) - 800650..801528 (+) 879 WP_003105640.1 F0F1 ATP synthase subunit gamma -
  P1T45_RS04490 (P1T45_04495) atpD 801645..803051 (+) 1407 WP_004234323.1 F0F1 ATP synthase subunit beta -
  P1T45_RS04495 (P1T45_04500) - 803064..803480 (+) 417 WP_003103020.1 F0F1 ATP synthase subunit epsilon -
  P1T45_RS04500 (P1T45_04505) - 803605..803841 (+) 237 WP_003105566.1 DUF1146 family protein -
  P1T45_RS04505 (P1T45_04510) murA 803906..805176 (+) 1271 Protein_839 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  P1T45_RS04510 (P1T45_04515) - 805180..805368 (+) 189 WP_004234321.1 DNA-directed RNA polymerase subunit beta -
  P1T45_RS04515 (P1T45_04520) endA 805399..806268 (+) 870 WP_004234319.1 DNA/RNA non-specific endonuclease Machinery gene
  P1T45_RS04520 (P1T45_04525) pheS 806544..807587 (+) 1044 WP_003106509.1 phenylalanine--tRNA ligase subunit alpha -
  P1T45_RS04525 (P1T45_04530) pheT 807673..810615 (+) 2943 WP_308695678.1 phenylalanine--tRNA ligase subunit beta -
  P1T45_RS04530 (P1T45_04535) - 810840..811037 (+) 198 WP_231082312.1 PfkB family carbohydrate kinase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31932.66 Da        Isoelectric Point: 9.8666

>NTDB_id=799251 P1T45_RS04515 WP_004234319.1 805399..806268(+) (endA) [Streptococcus parauberis strain KSP45]
MSNHNSKNWKNIGSLILLIFVLAGSYLSKNNVISDNNPIKQIYQSVTGESDGKPFTKDNNNPETPSKAQALTVMTSHVKN
QLVGKITWNGAGAFIINNNKTNLNAKVSSAPYANNQIKYVQGRKVPLVANALLAKSTRQYQNRNETGNGYTNWKPAGWHQ
LHGLLGEYDHAVDRGHLLGYAIVGGLKGFDASTSNPSNIATQLSWANQAADEDSTGQNYYETLIRHALDQNKRVRYRVTL
VYEGNNILSKGSHLEAKSDDGSLEFNVFIPNIQKGIKVNYQTGQVDIER

Nucleotide


Download         Length: 870 bp        

>NTDB_id=799251 P1T45_RS04515 WP_004234319.1 805399..806268(+) (endA) [Streptococcus parauberis strain KSP45]
ATGTCAAATCACAATTCCAAAAATTGGAAAAATATAGGTAGTCTTATCTTGCTAATTTTCGTTCTAGCAGGTTCCTATCT
AAGTAAGAACAATGTCATTTCGGATAATAATCCGATTAAACAAATCTATCAATCAGTAACCGGTGAAAGTGATGGAAAGC
CTTTTACCAAGGATAATAATAACCCTGAAACGCCAAGTAAAGCTCAAGCATTGACGGTAATGACTAGTCATGTTAAAAAT
CAATTAGTTGGTAAAATTACATGGAACGGTGCGGGTGCTTTTATTATCAATAATAACAAAACAAATTTAAATGCTAAGGT
GTCTAGTGCCCCTTATGCTAATAATCAAATTAAATATGTACAAGGTCGAAAAGTGCCACTTGTCGCAAATGCCTTATTAG
CAAAGTCAACAAGACAATATCAAAATCGTAATGAAACAGGTAATGGTTACACCAATTGGAAACCTGCCGGATGGCATCAG
TTACATGGTTTGTTGGGGGAATATGACCATGCGGTGGACAGAGGTCACCTGTTAGGCTATGCCATAGTTGGTGGACTTAA
GGGGTTTGATGCCTCAACGAGTAACCCAAGCAACATAGCAACGCAATTATCATGGGCTAATCAAGCAGCAGATGAAGATT
CAACTGGTCAAAACTATTATGAGACGCTAATACGACATGCACTTGATCAAAATAAGCGTGTGCGCTATCGTGTAACTTTA
GTTTATGAAGGGAACAATATTTTATCTAAAGGAAGTCATTTGGAAGCAAAATCTGATGATGGAAGCTTAGAATTTAATGT
GTTCATTCCAAATATTCAAAAAGGAATAAAAGTCAATTATCAGACTGGTCAGGTCGATATAGAACGCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(92-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

64.159

78.201

0.502
  endA Streptococcus pneumoniae D39

64.159

78.201

0.502
  endA Streptococcus pneumoniae R6

64.159

78.201

0.502
  endA Streptococcus pneumoniae TIGR4

64.159

78.201

0.502