Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RDJ18_RS08890 Genome accession   NZ_CP133442
Coordinates   1758987..1759760 (-) Length   257 a.a.
NCBI ID   WP_259351469.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA191     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1753987..1764760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDJ18_RS08855 (RDJ18_08855) - 1754240..1755010 (-) 771 WP_000473701.1 isoprenyl transferase -
  RDJ18_RS08860 (RDJ18_08860) frr 1755383..1755937 (-) 555 WP_001280006.1 ribosome recycling factor -
  RDJ18_RS08865 (RDJ18_08865) pyrH 1755956..1756678 (-) 723 WP_000057330.1 UMP kinase -
  RDJ18_RS08870 (RDJ18_08870) tsf 1756815..1757696 (-) 882 WP_000201387.1 translation elongation factor Ts -
  RDJ18_RS08875 (RDJ18_08875) - 1757731..1757844 (-) 114 WP_001789890.1 hypothetical protein -
  RDJ18_RS08880 (RDJ18_08880) rpsB 1757878..1758645 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  RDJ18_RS08885 (RDJ18_08885) - 1758844..1758936 (-) 93 WP_001790530.1 hypothetical protein -
  RDJ18_RS08890 (RDJ18_08890) codY 1758987..1759760 (-) 774 WP_259351469.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RDJ18_RS08895 (RDJ18_08895) hslU 1759785..1761188 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  RDJ18_RS08900 (RDJ18_08900) hslV 1761254..1761799 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  RDJ18_RS08905 (RDJ18_08905) xerC 1761796..1762692 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  RDJ18_RS08910 (RDJ18_08910) trmFO 1763109..1764416 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28702.08 Da        Isoelectric Point: 5.7563

>NTDB_id=799010 RDJ18_RS08890 WP_259351469.1 1758987..1759760(-) (codY) [Staphylococcus aureus strain SA191]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEACDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=799010 RDJ18_RS08890 WP_259351469.1 1758987..1759760(-) (codY) [Staphylococcus aureus strain SA191]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGTGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.412

100

0.424