Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OO816_RS20645 Genome accession   NZ_AP026095
Coordinates   4090142..4090609 (+) Length   155 a.a.
NCBI ID   WP_000381746.1    Uniprot ID   Q8X892
Organism   Escherichia coli strain 53_142304     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4085142..4095609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO816_RS20600 (CL8NIID53_39550) rplP 4085252..4085662 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  OO816_RS20605 (CL8NIID53_39560) rpsC 4085675..4086376 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  OO816_RS20610 (CL8NIID53_39570) rplV 4086394..4086726 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  OO816_RS20615 (CL8NIID53_39580) rpsS 4086741..4087019 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  OO816_RS20620 (CL8NIID53_39590) rplB 4087036..4087857 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  OO816_RS20625 (CL8NIID53_39600) rplW 4087875..4088177 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  OO816_RS20630 (CL8NIID53_39610) rplD 4088174..4088779 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  OO816_RS20635 (CL8NIID53_39620) rplC 4088790..4089419 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  OO816_RS20640 (CL8NIID53_39630) rpsJ 4089452..4089763 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  OO816_RS20645 (CL8NIID53_39640) pilD 4090142..4090609 (+) 468 WP_000381746.1 A24 family peptidase Machinery gene
  OO816_RS20650 (CL8NIID53_39650) bfr 4090606..4091082 (-) 477 WP_000675516.1 bacterioferritin -
  OO816_RS20655 (CL8NIID53_39660) bfd 4091155..4091349 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  OO816_RS20660 (CL8NIID53_39670) tuf 4091532..4092716 (-) 1185 WP_000031783.1 elongation factor Tu -
  OO816_RS20665 (CL8NIID53_39680) fusA 4092787..4094901 (-) 2115 WP_000124700.1 elongation factor G -
  OO816_RS20670 (CL8NIID53_39690) rpsG 4094998..4095468 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17099.29 Da        Isoelectric Point: 8.1343

>NTDB_id=79877 OO816_RS20645 WP_000381746.1 4090142..4090609(+) (pilD) [Escherichia coli strain 53_142304]
MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVIGWDSLLIGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=79877 OO816_RS20645 WP_000381746.1 4090142..4090609(+) (pilD) [Escherichia coli strain 53_142304]
ATGGACACTACCCTTCCCTTTCTAATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTCATCCTGATGGTTTAGCCG
ATGCGTTATGGGGGGCAATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGCGCCTGGCATTCATGGGCCTTCTTACCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAATCATTAAAAAACCCGCTGC
CTTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTATAGGCTGGGATAGTTTGCTGATAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8X892

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

43.478

89.032

0.387

Multiple sequence alignment