Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   L6498_RS21300 Genome accession   NZ_AP022907
Coordinates   4119859..4122195 (-) Length   778 a.a.
NCBI ID   WP_000528067.1    Uniprot ID   A0A0B5NRI0
Organism   Bacillus cereus strain MRY14-0100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4114859..4127195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6498_RS21275 (BCM0100_4194) - 4117522..4117866 (+) 345 WP_000209458.1 PH domain-containing protein -
  L6498_RS21280 (BCM0100_4195) - 4117905..4118972 (-) 1068 WP_000793108.1 AI-2E family transporter -
  L6498_RS21285 (BCM0100_4196) - 4119149..4119361 (+) 213 WP_000242546.1 hypothetical protein -
  L6498_RS21290 (BCM0100_4197) - 4119396..4119524 (-) 129 WP_001053553.1 YrzQ family protein -
  L6498_RS21295 (BCM0100_4198) - 4119543..4119731 (-) 189 WP_000469281.1 hypothetical protein -
  L6498_RS21300 (BCM0100_4199) recD2 4119859..4122195 (-) 2337 WP_000528067.1 ATP-dependent RecD-like DNA helicase Machinery gene
  L6498_RS21305 (BCM0100_4200) - 4122291..4122950 (-) 660 WP_000066395.1 tetratricopeptide repeat protein -
  L6498_RS21310 (BCM0100_4201) mnmA 4123061..4124176 (-) 1116 WP_001038006.1 tRNA 2-thiouridine(34) synthase MnmA -
  L6498_RS21315 (BCM0100_4202) - 4124193..4125338 (-) 1146 WP_000439913.1 cysteine desulfurase family protein -
  L6498_RS21320 (BCM0100_4203) - 4125374..4125790 (-) 417 WP_000704116.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87443.95 Da        Isoelectric Point: 5.2015

>NTDB_id=79863 L6498_RS21300 WP_000528067.1 4119859..4122195(-) (recD2) [Bacillus cereus strain MRY14-0100]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLIRETMSLLNNQEGRVTEEDIISCIEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=79863 L6498_RS21300 WP_000528067.1 4119859..4122195(-) (recD2) [Bacillus cereus strain MRY14-0100]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACGTTGACAGGACATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAACGCACAGCTGAAAAAATTGTGGACCATCTAGGGGAACATGCTATTTCTAAAATTATGGATG
ATCCTGAGGCTTTAAACGGTGTTGTTAACAAACAAAAAGCGCAAGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTATCAGCAGTATAAAGAGAT
GACATTAGAAGTGATTCGTAATAACCCATATCAGCTTATTGAAGAAGTGGATGGGATTGGATTTGGAAGAGCGGATGATA
TCGGACGTGCGTTAGGTATATCGGGTAATCACGACGACCGTGTACGCGCGGGATGTTTTTATACGTTAGAGAATGTATCA
TTACAACTTGGTCACGTTTATATGAGAAAAGATCAACTTATAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
AGTGACAGAGGAAGACATTATAAGCTGTATTGAAATGATGCAGAGTGAAGGGAAAGTCATCATCGAAGAAGAGCGAGTAT
ATTTGGCATCGTTATTCTATTCTGAAAAAGGTGTTGTAAAGTCTATTCGCAGGCTCATGAATCAGGAAGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTGAAATTGAAGAACAATTGAACGTACAGTATGCACCGCTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACGGGTGGACCGGGAACGGGAAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATATAGTGATGATAATCCATTTCCGATA
CTATTAACAGCTCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGCACAATTCACCGTTT
ACTTGGATGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACAGATCCGGTACAAGGGAAATTACTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACTAACATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTACCATCTGTAGGACCTGGGCAAGTATTGAAAGATTTATTAAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGTTCATCAGTGATTCAACTTGCCCATGCGATAAAAAATGGAACGCTCCCACCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGCACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGC
GAAAACGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGACCGGCTGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTTTTTAATCCGAAAAGAGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTTTTGCAACTCGTTAATCAGCCGGAGAGCCAAGTATTTAATGGTGATATCGGTGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAACCAGATTTAAATCAAATTACACATGCTTATTGCTGTTCGATTCATAAGTCGCAAGGGAGTGAGTTTCCGATTGTGA
TTATGCCGATAGTAAAAAGTTACAATCGTATGTTACGTCGTAATTTAATTTACACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCAGCTTTCCAGTCTGGTGTAAATCGTCTTGATGATGCAATGCGTCAAACGACTTTAGC
GAGTCGCTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B5NRI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.269

100

0.582

Multiple sequence alignment