Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PY250_RS00685 Genome accession   NZ_CP119334
Coordinates   150801..151526 (-) Length   241 a.a.
NCBI ID   WP_042522603.1    Uniprot ID   A0A7Y0QW32
Organism   Vibrio alginolyticus strain 2-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 145801..156526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY250_RS00660 (PY250_00660) - 146954..147445 (+) 492 WP_005383002.1 type II secretion system protein M -
  PY250_RS00665 (PY250_00665) - 147447..148208 (+) 762 WP_275593422.1 type II secretion system protein N -
  PY250_RS00670 (PY250_00670) cysQ 148501..149328 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PY250_RS00675 (PY250_00675) nudE 149373..149942 (-) 570 WP_042522602.1 ADP compounds hydrolase NudE -
  PY250_RS00680 (PY250_00680) nfuA 150119..150703 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  PY250_RS00685 (PY250_00685) comF 150801..151526 (-) 726 WP_042522603.1 amidophosphoribosyltransferase Machinery gene
  PY250_RS00690 (PY250_00690) bioH 151611..152378 (+) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  PY250_RS00695 (PY250_00695) - 152503..152967 (+) 465 WP_005379316.1 hypothetical protein -
  PY250_RS00700 (PY250_00700) - 153072..155393 (-) 2322 WP_042522604.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27767.01 Da        Isoelectric Point: 9.5795

>NTDB_id=798528 PY250_RS00685 WP_042522603.1 150801..151526(-) (comF) [Vibrio alginolyticus strain 2-1]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKQPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=798528 PY250_RS00685 WP_042522603.1 150801..151526(-) (comF) [Vibrio alginolyticus strain 2-1]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCAACCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y0QW32

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473