Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MT340_RS06340 Genome accession   NZ_CP119327
Coordinates   1262879..1265326 (+) Length   815 a.a.
NCBI ID   WP_243603684.1    Uniprot ID   -
Organism   Staphylococcus sp. NRL 16/872     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1257879..1270326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT340_RS06315 (MT340_006315) - 1257900..1258043 (+) 144 WP_243589221.1 SAS049 family protein -
  MT340_RS06320 (MT340_006320) - 1258609..1259613 (-) 1005 WP_243589222.1 LLM class flavin-dependent oxidoreductase -
  MT340_RS06325 (MT340_006325) - 1259850..1260989 (+) 1140 WP_243589223.1 cysteine desulfurase family protein -
  MT340_RS06330 (MT340_006330) mnmA 1260992..1262104 (+) 1113 WP_243589224.1 tRNA 2-thiouridine(34) synthase MnmA -
  MT340_RS06335 (MT340_006335) - 1262206..1262877 (+) 672 WP_243589225.1 tetratricopeptide repeat protein -
  MT340_RS06340 (MT340_006340) recD2 1262879..1265326 (+) 2448 WP_243603684.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MT340_RS06345 (MT340_006345) alaS 1265619..1268249 (+) 2631 WP_243603685.1 alanine--tRNA ligase -
  MT340_RS06350 (MT340_006350) - 1268314..1268574 (+) 261 WP_103328434.1 IreB family regulatory phosphoprotein -
  MT340_RS06355 (MT340_006355) ruvX 1268578..1269006 (+) 429 WP_243589228.1 Holliday junction resolvase RuvX -
  MT340_RS06360 (MT340_006360) - 1269021..1269335 (+) 315 WP_103298274.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 815 a.a.        Molecular weight: 92047.23 Da        Isoelectric Point: 4.4722

>NTDB_id=798486 MT340_RS06340 WP_243603684.1 1262879..1265326(+) (recD2) [Staphylococcus sp. NRL 16/872]
MSDPTLFDYSMIKGTVDAILFQNQDNFYTVLKIDTIETNESFDNLPTVVGFFPNIAEGDVYIFKGQVVEHPRYGKQLKAE
TFEKELPQTKDAIVSYLSSDLFKGIGKKTAQNIVNTLGENAINDILNDATVLEKVPSLPKKKQQQIAEQISANQESEKVM
IRLHDLGFGPKLSMAIYQFYQSETLNVLEKNPYQLVYDVKGIGFQKADTLARNNGIEFNDPERLKAGLLYTLEEECIKQG
HTYLSYQFVIEVTQEMLSDPRNEEVVEGNQLEEVLQILAEESKLVFENDRVAIPSLYYSELKSVQNLYRIKTYKNKLKEI
EQSDLQLHIGEIEDSNNVSYAPSQKEALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLNYSDYEEDDYPIVL
AAPTGRASKRLQESTGLEAMTIHRLIGWNQDTQPEDILDNEINAKLIIIDEMSMVDTWLFHQFLSAVPLDAQIILVGDED
QLPSVGPGQIFKDLIDSNALPRVNLTEVYRQQDGSSIIDLAHRMKHGEPIDITKRYHDRSFINCNVDQIPDVVEKVVSSA
VKKGYDMSDIQVLAPMYKGSAGIKRLNQVLQDILNPKKDDVREIEFGDINFRKGDKVLQLVNRPNDNIFNGDIGVIVGIF
WAKENALNKDVLVVDFEGNEITFTRQDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKQSLVL
LGDPKAFEIGLNTQGQTRQTQLRELILAYFEVDTPSEDTSTQGKNGETEGYGLNEEAEESAHDVQDRIVLSEATIYQINP
MINMGDVSPYDFVER

Nucleotide


Download         Length: 2448 bp        

>NTDB_id=798486 MT340_RS06340 WP_243603684.1 1262879..1265326(+) (recD2) [Staphylococcus sp. NRL 16/872]
ATGTCAGACCCTACACTATTTGACTATTCAATGATTAAGGGGACAGTAGATGCTATTTTATTTCAGAACCAAGATAATTT
TTATACTGTTCTTAAAATCGATACCATTGAAACGAATGAATCATTTGATAACTTGCCCACAGTTGTAGGGTTCTTTCCAA
ATATTGCTGAAGGCGATGTTTATATTTTTAAAGGACAAGTGGTTGAACATCCTCGTTACGGTAAACAGTTAAAGGCTGAA
ACATTTGAAAAAGAGTTGCCGCAAACTAAAGATGCGATTGTGAGTTACTTATCAAGTGACCTTTTCAAAGGAATAGGGAA
AAAAACGGCTCAAAATATTGTAAATACTTTAGGTGAAAATGCAATTAATGATATTTTGAATGATGCTACTGTTTTGGAAA
AAGTGCCGAGTTTACCTAAAAAGAAACAACAGCAAATAGCTGAACAAATTAGCGCAAATCAAGAATCAGAAAAAGTGATG
ATTCGTTTACATGACTTAGGATTTGGGCCTAAGTTATCAATGGCGATTTATCAATTTTACCAATCAGAAACATTAAATGT
ACTAGAGAAAAATCCCTACCAACTTGTTTACGATGTGAAAGGTATTGGATTCCAAAAAGCTGATACATTAGCGCGCAATA
ATGGAATAGAATTTAATGATCCAGAAAGATTGAAAGCAGGACTTCTATATACGCTAGAGGAAGAATGTATTAAACAAGGG
CATACATACTTATCTTATCAATTTGTGATAGAAGTTACACAAGAGATGTTAAGTGACCCGCGTAATGAAGAAGTAGTAGA
GGGCAATCAATTAGAAGAAGTACTACAAATTCTGGCGGAAGAAAGTAAACTTGTATTTGAAAATGACCGTGTAGCTATAC
CAAGTCTTTACTATTCCGAATTAAAAAGTGTGCAAAACTTATATCGTATAAAAACGTATAAAAATAAACTTAAAGAAATA
GAACAGTCTGATTTACAATTACACATTGGTGAGATTGAAGACAGTAATAATGTGAGTTATGCGCCTTCGCAAAAAGAAGC
GTTGCAAACCGCTATCAATTCCAAAATTATGCTCTTAACAGGCGGGCCAGGTACGGGTAAAACGACAGTTATTAAAGGAA
TCGTCGAATTATACGCTGAAATTCATGGCCTATCATTAAATTATTCTGATTATGAAGAAGATGATTATCCGATTGTCTTA
GCTGCGCCTACTGGACGTGCGTCTAAGCGTCTTCAAGAGTCAACGGGACTAGAAGCGATGACGATTCATCGTTTGATAGG
TTGGAATCAAGATACGCAACCTGAAGATATTTTAGATAATGAAATCAATGCCAAATTAATAATTATAGATGAGATGTCTA
TGGTAGATACGTGGTTATTCCATCAATTTCTAAGTGCCGTGCCTTTAGATGCACAAATTATTCTAGTAGGTGATGAAGAC
CAATTACCTTCAGTAGGTCCTGGTCAAATATTTAAAGATTTAATAGACTCTAATGCTTTACCACGCGTTAATCTTACTGA
AGTGTATCGTCAGCAAGATGGTTCAAGTATTATTGATTTGGCACATCGTATGAAACATGGTGAACCAATCGATATTACAA
AACGTTATCATGATAGAAGTTTTATTAACTGTAACGTTGATCAAATCCCCGATGTAGTTGAAAAGGTCGTTTCAAGTGCA
GTGAAAAAAGGTTATGATATGAGCGACATTCAAGTGTTAGCACCGATGTACAAAGGGAGCGCTGGAATCAAACGACTTAA
CCAGGTATTGCAAGACATTTTAAATCCTAAAAAAGATGATGTTAGAGAAATTGAATTTGGAGATATTAACTTCCGAAAAG
GAGATAAAGTACTCCAATTAGTAAATAGACCTAATGATAATATTTTTAATGGCGATATTGGCGTAATTGTCGGCATTTTC
TGGGCAAAGGAAAATGCGCTCAATAAAGATGTACTTGTCGTGGATTTTGAAGGCAATGAAATCACGTTCACTCGTCAAGA
TTTATTAGAATTAACGCATGCTTATTGTACATCGATTCATAAATCACAGGGCTCAGAATTTCCGATTGTCATCATGCCGA
TAGTTAAACAATATTTTAGAATGTTACAACGTCCAATACTATATACTGGGCTTACTCGAGCTAAGCAATCACTCGTTTTA
TTAGGTGATCCAAAAGCATTTGAAATTGGCTTAAATACACAAGGACAAACGCGTCAAACACAACTTCGCGAACTGATTCT
TGCTTACTTTGAAGTTGATACGCCTTCTGAAGATACCTCTACGCAAGGTAAGAATGGTGAGACTGAGGGTTATGGTTTAA
ATGAAGAAGCCGAAGAAAGTGCACATGATGTTCAGGACCGAATTGTGTTAAGTGAAGCAACGATTTATCAAATTAATCCA
ATGATTAATATGGGTGACGTTTCGCCATATGACTTTGTCGAACGTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-656)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(340-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.552

100

0.506