Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RB262_RS02305 Genome accession   NZ_CP133126
Coordinates   480475..480942 (-) Length   155 a.a.
NCBI ID   WP_000381746.1    Uniprot ID   Q8X892
Organism   Escherichia coli O157:H7 strain PNUSAE146131     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 475475..485942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB262_RS02280 (RB262_02280) rpsG 475616..476086 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  RB262_RS02285 (RB262_02285) fusA 476183..478297 (+) 2115 WP_000124700.1 elongation factor G -
  RB262_RS02290 (RB262_02290) tuf 478368..479552 (+) 1185 WP_000031783.1 elongation factor Tu -
  RB262_RS02295 (RB262_02295) bfd 479735..479929 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  RB262_RS02300 (RB262_02300) bfr 480002..480478 (+) 477 WP_000675516.1 bacterioferritin -
  RB262_RS02305 (RB262_02305) pilD 480475..480942 (-) 468 WP_000381746.1 A24 family peptidase Machinery gene
  RB262_RS02310 (RB262_02310) rpsJ 481321..481632 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  RB262_RS02315 (RB262_02315) rplC 481665..482294 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  RB262_RS02320 (RB262_02320) rplD 482305..482910 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  RB262_RS02325 (RB262_02325) rplW 482907..483209 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  RB262_RS02330 (RB262_02330) rplB 483227..484048 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  RB262_RS02335 (RB262_02335) rpsS 484065..484343 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  RB262_RS02340 (RB262_02340) rplV 484358..484690 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  RB262_RS02345 (RB262_02345) rpsC 484708..485409 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  RB262_RS02350 (RB262_02350) rplP 485422..485832 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17099.29 Da        Isoelectric Point: 8.1343

>NTDB_id=798435 RB262_RS02305 WP_000381746.1 480475..480942(-) (pilD) [Escherichia coli O157:H7 strain PNUSAE146131]
MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVIGWDSLLIGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=798435 RB262_RS02305 WP_000381746.1 480475..480942(-) (pilD) [Escherichia coli O157:H7 strain PNUSAE146131]
ATGGACACTACCCTTCCCTTTCTAATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTCATCCTGATGGTTTAGCCG
ATGCGTTATGGGGGGCAATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGCGCCTGGCATTCATGGGCCTTCTTACCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAATCATTAAAAAACCCGCTGC
CTTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTATAGGCTGGGATAGTTTGCTGATAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8X892

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

43.478

89.032

0.387