Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PY247_RS07340 Genome accession   NZ_CP119223
Coordinates   1553970..1554458 (+) Length   162 a.a.
NCBI ID   WP_004657488.1    Uniprot ID   A0A653K6Z4
Organism   Acinetobacter proteolyticus strain AP54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1548970..1559458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY247_RS23825 - 1549410..1551377 (+) 1968 WP_338072994.1 hypothetical protein -
  PY247_RS23830 - 1551335..1551925 (+) 591 WP_338072995.1 hypothetical protein -
  PY247_RS07325 (PY247_07325) - 1551927..1552442 (+) 516 Protein_1417 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PY247_RS07330 (PY247_07330) - 1552512..1552952 (+) 441 Protein_1418 type IV pilin protein -
  PY247_RS07335 (PY247_07335) - 1553325..1553973 (+) 649 Protein_1419 GspH/FimT family protein -
  PY247_RS07340 (PY247_07340) pilV 1553970..1554458 (+) 489 WP_004657488.1 type IV pilus modification protein PilV Machinery gene
  PY247_RS07345 (PY247_07345) - 1554459..1555471 (+) 1013 Protein_1421 PilW family protein -
  PY247_RS07350 (PY247_07350) - 1555479..1556244 (+) 766 Protein_1422 pilus assembly PilX N-terminal domain-containing protein -
  PY247_RS07355 (PY247_07355) - 1556258..1556671 (+) 414 WP_275573883.1 hypothetical protein -
  PY247_RS07360 (PY247_07360) - 1556695..1557420 (+) 726 WP_275573884.1 hypothetical protein -
  PY247_RS07365 (PY247_07365) - 1557495..1558541 (+) 1047 WP_275573885.1 hypothetical protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17386.09 Da        Isoelectric Point: 5.8712

>NTDB_id=798218 PY247_RS07340 WP_004657488.1 1553970..1554458(+) (pilV) [Acinetobacter proteolyticus strain AP54]
MNIQKQKGVGLVEVLVALVLLAISVLGFAALQLRAIDASFEANKQVLALTIARDLAERMRANPQATRAGIYNVKAVEISK
TEVVNVADKPEKIALQDLQNVALDAKNNGMNLAVDQCPTGSNRQCIYVAWNETNLAGDQGIAACIKDGVYVSGSHCLFLE
AY

Nucleotide


Download         Length: 489 bp        

>NTDB_id=798218 PY247_RS07340 WP_004657488.1 1553970..1554458(+) (pilV) [Acinetobacter proteolyticus strain AP54]
ATGAATATTCAAAAACAGAAAGGTGTCGGGCTTGTTGAAGTATTGGTTGCTCTGGTTTTATTGGCAATCAGTGTGTTGGG
CTTTGCTGCTTTACAGTTGCGGGCGATTGATGCCAGCTTTGAAGCGAATAAACAGGTATTGGCACTCACGATTGCACGTG
ACCTTGCTGAGCGGATGCGGGCTAATCCGCAAGCAACCCGTGCTGGAATATATAACGTGAAAGCGGTTGAAATCTCTAAA
ACTGAAGTTGTAAATGTAGCAGATAAACCTGAAAAGATTGCATTACAAGACTTACAAAATGTGGCACTTGATGCCAAAAA
TAATGGCATGAACCTCGCTGTTGACCAATGTCCAACAGGAAGTAATCGACAATGTATCTATGTGGCTTGGAATGAAACCA
ATTTAGCAGGTGATCAAGGCATCGCAGCATGTATTAAAGATGGTGTCTATGTTTCTGGATCACACTGCTTATTTTTGGAG
GCCTATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653K6Z4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baylyi ADP1

44.382

100

0.488
  pilV Acinetobacter baumannii D1279779

39.362

100

0.457