Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   L6495_RS19165 Genome accession   NZ_AP022903
Coordinates   3713719..3714498 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus cereus strain MRY14-0079     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3708719..3719498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6495_RS19140 (BCM0079_3816) uppS 3709463..3710239 (-) 777 WP_017561514.1 isoprenyl transferase -
  L6495_RS19145 (BCM0079_3817) frr 3710325..3710882 (-) 558 WP_017561513.1 ribosome recycling factor -
  L6495_RS19150 (BCM0079_3818) pyrH 3710885..3711607 (-) 723 WP_000042663.1 UMP kinase -
  L6495_RS19155 (BCM0079_3819) tsf 3711674..3712561 (-) 888 WP_001018581.1 translation elongation factor Ts -
  L6495_RS19160 (BCM0079_3820) rpsB 3712665..3713366 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  L6495_RS19165 (BCM0079_3821) codY 3713719..3714498 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  L6495_RS19170 (BCM0079_3822) hslU 3714576..3715967 (-) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  L6495_RS19175 (BCM0079_3823) hslV 3715990..3716532 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  L6495_RS19180 (BCM0079_3824) xerC 3716575..3717474 (-) 900 WP_001101227.1 tyrosine recombinase XerC -
  L6495_RS19185 (BCM0079_3825) trmFO 3717540..3718844 (-) 1305 WP_001991958.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=79808 L6495_RS19165 WP_000421288.1 3713719..3714498(-) (codY) [Bacillus cereus strain MRY14-0079]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=79808 L6495_RS19165 WP_000421288.1 3713719..3714498(-) (codY) [Bacillus cereus strain MRY14-0079]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCTGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment