Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   PY824_RS01995 Genome accession   NZ_CP119172
Coordinates   348976..349905 (+) Length   309 a.a.
NCBI ID   WP_014293979.1    Uniprot ID   A0A0E2PYD4
Organism   Streptococcus macedonicus strain SGM CIP105683     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 343976..354905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY824_RS01975 (PY824_01975) - 344196..345851 (+) 1656 WP_014293975.1 peptide ABC transporter substrate-binding protein -
  PY824_RS01980 (PY824_01980) - 345962..346876 (+) 915 WP_115265987.1 ABC transporter permease -
  PY824_RS01985 (PY824_01985) - 346887..347918 (+) 1032 WP_014293977.1 ABC transporter permease -
  PY824_RS01990 (PY824_01990) oppD 347930..348976 (+) 1047 WP_014293978.1 ABC transporter ATP-binding protein Regulator
  PY824_RS01995 (PY824_01995) amiF 348976..349905 (+) 930 WP_014293979.1 ABC transporter ATP-binding protein Regulator
  PY824_RS02000 (PY824_02000) - 350114..351370 (-) 1257 WP_014293928.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35071.80 Da        Isoelectric Point: 5.4462

>NTDB_id=798033 PY824_RS01995 WP_014293979.1 348976..349905(+) (amiF) [Streptococcus macedonicus strain SGM CIP105683]
MTENRKKLVELKNVSLTFNEGKKNEVKAIDNISFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINKGEIDFDGETISHL
KGKELHEFRKNAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVNSKEERDQKVQDLLALVGLNKDHSTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLTAIPEPDPESERNRIHEEYDPSAELDGQPREMREITPGHFVFCTEAEAEVYKQEL

Nucleotide


Download         Length: 930 bp        

>NTDB_id=798033 PY824_RS01995 WP_014293979.1 348976..349905(+) (amiF) [Streptococcus macedonicus strain SGM CIP105683]
ATGACTGAAAATAGAAAAAAGCTTGTTGAACTTAAAAATGTATCATTGACTTTTAACGAAGGTAAAAAGAACGAAGTAAA
AGCTATTGATAATATCAGTTTTGATATTTACGAAGGTGAAGTTTTCGGTCTTGTTGGAGAATCAGGTTCTGGTAAGACAA
CTGTTGGTCGTGCTATTTTGAAATTGTACGACATTAATAAAGGTGAAATTGATTTTGATGGTGAAACTATCTCTCATCTT
AAAGGGAAAGAACTGCACGAATTCCGTAAAAATGCTCAAATGATTTTCCAAGACCCACAAGCTAGTCTTAATGGTCGTAT
GAAAATTCGTGACATTGTTGCGGAAGGACTTGACATCCATAAATTAGTTAACAGTAAAGAAGAACGTGACCAAAAAGTTC
AAGATTTACTTGCTTTAGTTGGACTTAACAAAGACCATTCAACACGCTATCCACATGAATTTTCAGGTGGACAACGTCAA
CGTATTGGTATCGCTCGTGCTCTTGCTGTTGAACCAAAGTTCATCATTGCCGATGAACCAATTTCAGCCCTTGACGTGTC
AATCCAAGCTCAAGTTGTTAACCTTATGCAAAAACTTCAAAGAGAACAGGGGTTAACATATCTCTTTATCGCTCACGATT
TGTCAATGGTTAAATACATCTCAGATCGTATTGGGGTTATGCACTGGGGTAAAATGCTTGAAATTGGAACATCTGATGAT
GTCTATAATCATCCAATTCACCCATATACTAAGAGCTTATTGACCGCAATTCCAGAACCAGACCCAGAATCTGAAAGAAA
TCGTATCCATGAAGAATACGATCCAAGTGCAGAACTAGATGGTCAACCACGTGAAATGCGTGAAATTACACCTGGCCACT
TTGTTTTTTGTACAGAAGCAGAAGCAGAAGTTTATAAACAAGAATTATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-272)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2PYD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.426

98.706

0.537
  amiF Streptococcus salivarius strain HSISS4

54.426

98.706

0.537
  amiF Streptococcus thermophilus LMG 18311

54.098

98.706

0.534