Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   RBH01_RS27950 Genome accession   NZ_CP132997
Coordinates   6005662..6006186 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain ZYPA162     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6000662..6011186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH01_RS27935 (RBH01_27940) aroB 6001778..6002884 (-) 1107 WP_080911875.1 3-dehydroquinate synthase -
  RBH01_RS27940 (RBH01_27945) aroK 6002934..6003452 (-) 519 WP_003095833.1 shikimate kinase AroK -
  RBH01_RS27945 (RBH01_27950) pilQ 6003464..6005608 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  RBH01_RS27950 (RBH01_27955) comL/pilP 6005662..6006186 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  RBH01_RS27955 (RBH01_27960) pilO 6006183..6006806 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  RBH01_RS27960 (RBH01_27965) pilN 6006803..6007399 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  RBH01_RS27965 (RBH01_27970) pilM 6007399..6008463 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  RBH01_RS27970 (RBH01_27975) - 6008648..6011119 (+) 2472 WP_043096086.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=797971 RBH01_RS27950 WP_003095836.1 6005662..6006186(-) (comL/pilP) [Pseudomonas aeruginosa strain ZYPA162]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=797971 RBH01_RS27950 WP_003095836.1 6005662..6006186(-) (comL/pilP) [Pseudomonas aeruginosa strain ZYPA162]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
TCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362