Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RBH03_RS16035 Genome accession   NZ_CP132995
Coordinates   3428427..3429152 (+) Length   241 a.a.
NCBI ID   WP_003103309.1    Uniprot ID   Q9I629
Organism   Pseudomonas aeruginosa strain ZYPA192     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3423427..3434152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH03_RS16005 (RBH03_16010) - 3423547..3424425 (-) 879 WP_003103323.1 allophanate hydrolase subunit 1 -
  RBH03_RS16010 (RBH03_16015) - 3424427..3425803 (-) 1377 WP_033968950.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  RBH03_RS16015 (RBH03_16020) - 3425814..3426062 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  RBH03_RS16020 (RBH03_16025) - 3426139..3426897 (-) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  RBH03_RS16025 (RBH03_16030) - 3427015..3427941 (+) 927 WP_003118849.1 LysR family transcriptional regulator -
  RBH03_RS16030 (RBH03_16035) - 3427995..3428288 (+) 294 WP_003113255.1 hypothetical protein -
  RBH03_RS16035 (RBH03_16040) comF 3428427..3429152 (+) 726 WP_003103309.1 ComF family protein Machinery gene
  RBH03_RS16040 (RBH03_16045) - 3429194..3429514 (+) 321 WP_003103307.1 YfiM family lipoprotein -
  RBH03_RS16045 (RBH03_16050) - 3429582..3430340 (+) 759 WP_003103305.1 TOBE domain-containing protein -
  RBH03_RS16050 (RBH03_16055) - 3430402..3431376 (+) 975 WP_307753529.1 serine/threonine protein kinase -
  RBH03_RS16055 (RBH03_16060) rarD 3431579..3432475 (+) 897 WP_307753528.1 EamA family transporter RarD -
  RBH03_RS16060 (RBH03_16065) - 3433165..3433680 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27088.60 Da        Isoelectric Point: 11.2212

>NTDB_id=797828 RBH03_RS16035 WP_003103309.1 3428427..3429152(+) (comF) [Pseudomonas aeruginosa strain ZYPA192]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=797828 RBH03_RS16035 WP_003103309.1 3428427..3429152(+) (comF) [Pseudomonas aeruginosa strain ZYPA192]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTAGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGTGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9I629

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382