Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PU629_RS06915 Genome accession   NZ_CP119107
Coordinates   1536550..1538952 (+) Length   800 a.a.
NCBI ID   WP_275283554.1    Uniprot ID   -
Organism   Pullulanibacillus sp. KACC 23026     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1531550..1543952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PU629_RS06895 (PU629_06895) - 1532815..1533237 (+) 423 WP_275283551.1 Rrf2 family transcriptional regulator -
  PU629_RS06900 (PU629_06900) - 1533370..1534527 (+) 1158 WP_275283552.1 cysteine desulfurase family protein -
  PU629_RS06905 (PU629_06905) mnmA 1534591..1535694 (+) 1104 WP_275284371.1 tRNA 2-thiouridine(34) synthase MnmA -
  PU629_RS06910 (PU629_06910) - 1535810..1536481 (+) 672 WP_275283553.1 tetratricopeptide repeat protein -
  PU629_RS06915 (PU629_06915) recD2 1536550..1538952 (+) 2403 WP_275283554.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PU629_RS06920 (PU629_06920) - 1539060..1539251 (+) 192 WP_275283555.1 hypothetical protein -
  PU629_RS06925 (PU629_06925) - 1539321..1540427 (+) 1107 WP_275283556.1 AI-2E family transporter -
  PU629_RS06930 (PU629_06930) alaS 1540782..1543421 (+) 2640 WP_275283557.1 alanine--tRNA ligase -
  PU629_RS06935 (PU629_06935) - 1543463..1543726 (+) 264 WP_275283558.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 89388.73 Da        Isoelectric Point: 4.8671

>NTDB_id=797642 PU629_RS06915 WP_275283554.1 1536550..1538952(+) (recD2) [Pullulanibacillus sp. KACC 23026]
MSNPTSLDLFSEELPFIIGVPYHLIFQNSENAYTVMKVKIEETNISLPEKDIVVIGYFPALHLQESYHFFGNVKVHPRYG
HQFEVERFRKLLPQSKAGIVHYLSGDLFPGIGKATAERIVSALGEQAISKILENPDCLTEVPKLAADKATLIYEALLKHE
GLEKVMIGLTDYGFGPRLSMKIYQAYGNEALTIIEENPYRLVQDIEGIGFHRADELGKQYGLTGEHPDRIQAGILYVLNE
AAMNNGHVYLPKESVLQNATLLLSTPREPVSDEGIERELIVLHEEGKAILEEDRFYLPSLYFAEKGLVSSLKRLMEQSEF
QQNFSEAEFLAALGGLEDRLAIEYAPSQKAAIQQALASPVTLLTGGPGTGKTTVIKGIVDIYAELHGLSLNPKDYKDEPF
PFVLIAPTGRAAKRMSESTGLPAVTIHRLLGWKGGSGYEHDEENPLEGRLVIVDEMSMVDIWLANHLLRSLKTPVQIVIV
GDEDQLPSVGPGQVLNDLLHSHVLPTVRLTDIYRQAEGSSIIELAHAIKNGEQVIELQQAKEDRRFFACSQSQILDVVQK
VCANAHKKGFSSKDIQVLAPIYRGNAGIDALNKVLQDLFNPKHESKRFLTFGETEFRVGDKVLQLVNNPEDNVFNGDIGE
VVALFKANERTEKEDALVVSFDGIEVTVSRKDLGQLTLAYCTSIHKAQGSEFPIVVLPIVKGYHRMLRRNLIYTAITRSR
SYLIMCGDADAFMRAIQQTEGDRRFSHLKEKLIERLGAEREEEERSESEKAAVDSLQSSDPDDWEIDETLNEEEDPFLNL

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=797642 PU629_RS06915 WP_275283554.1 1536550..1538952(+) (recD2) [Pullulanibacillus sp. KACC 23026]
ATGTCGAACCCAACCTCCCTTGATCTGTTTTCGGAAGAACTCCCCTTTATCATAGGGGTTCCTTACCATCTTATCTTTCA
AAACAGTGAGAATGCCTATACGGTTATGAAGGTAAAAATTGAAGAAACCAATATAAGCCTCCCTGAAAAGGATATTGTGG
TTATCGGCTATTTTCCCGCTCTTCACCTACAGGAATCGTATCATTTTTTCGGAAACGTGAAAGTGCATCCTCGTTATGGG
CATCAATTTGAAGTGGAACGGTTTCGGAAGCTGCTGCCCCAATCAAAAGCAGGCATTGTTCATTATCTGTCGGGTGATTT
GTTTCCTGGAATTGGAAAAGCGACCGCTGAACGCATTGTCTCAGCACTTGGGGAACAGGCGATTTCAAAAATTCTGGAGA
ACCCGGATTGTTTGACAGAAGTGCCTAAGCTTGCGGCGGATAAAGCGACCTTAATTTACGAAGCGCTCTTAAAGCATGAA
GGCTTAGAGAAAGTGATGATTGGCCTTACGGATTACGGTTTCGGTCCCCGGTTATCGATGAAAATCTATCAAGCCTATGG
GAATGAAGCACTGACCATTATTGAGGAGAATCCTTACCGGCTTGTTCAGGATATTGAAGGGATTGGGTTTCATAGAGCGG
ATGAACTGGGGAAGCAATATGGGTTGACCGGTGAGCATCCCGATCGTATCCAAGCGGGTATCTTGTATGTGTTAAATGAA
GCCGCCATGAACAATGGCCATGTCTATCTTCCTAAGGAGTCCGTTCTTCAAAATGCAACCCTTTTACTGTCGACACCCCG
CGAGCCTGTAAGTGATGAAGGAATTGAACGGGAATTGATCGTGCTTCATGAGGAAGGCAAGGCGATATTGGAGGAGGACC
GTTTCTATCTTCCTTCTCTCTATTTCGCTGAAAAAGGGCTCGTATCAAGTCTGAAACGGTTAATGGAGCAGTCTGAGTTC
CAGCAAAATTTCTCTGAAGCGGAGTTTTTGGCTGCGTTAGGCGGTCTTGAGGACCGTCTCGCTATTGAATATGCGCCTTC
TCAAAAAGCTGCCATTCAACAGGCGTTAGCCTCTCCGGTGACTCTCTTGACAGGGGGGCCAGGGACTGGGAAAACGACCG
TTATTAAGGGGATTGTGGACATCTATGCCGAACTTCATGGTCTCTCGTTGAATCCAAAAGATTACAAAGATGAGCCCTTT
CCTTTTGTCTTGATTGCACCGACAGGACGGGCAGCCAAGCGCATGAGTGAATCGACAGGACTGCCTGCTGTCACGATTCA
CCGTCTTCTTGGCTGGAAAGGCGGCTCGGGTTATGAGCATGATGAAGAGAATCCACTGGAGGGACGCTTAGTTATTGTTG
ATGAGATGTCCATGGTAGATATTTGGCTCGCCAATCATTTATTGCGCTCATTAAAGACGCCCGTACAAATCGTTATTGTT
GGAGATGAAGATCAGCTTCCTTCGGTTGGACCTGGCCAAGTTCTGAATGATCTGCTTCATTCACATGTTTTGCCGACCGT
CAGGCTGACCGACATCTATAGACAAGCTGAAGGGTCTTCTATTATCGAACTTGCTCATGCCATCAAAAATGGGGAGCAAG
TGATCGAACTGCAGCAGGCTAAAGAGGATCGTCGATTTTTTGCCTGCTCACAAAGTCAAATCTTAGATGTTGTCCAAAAG
GTATGTGCCAACGCTCATAAGAAGGGGTTTTCATCGAAGGATATTCAAGTACTGGCTCCGATCTATAGGGGCAATGCGGG
GATTGATGCTTTAAATAAGGTCCTTCAAGATTTGTTTAACCCAAAGCATGAATCCAAGCGTTTTTTAACATTTGGTGAGA
CGGAGTTTCGGGTTGGAGATAAAGTGCTCCAACTGGTCAATAACCCAGAGGATAATGTTTTTAATGGGGATATTGGTGAA
GTGGTTGCCCTTTTCAAAGCGAATGAGCGAACGGAAAAAGAAGATGCGCTAGTGGTGTCTTTTGATGGGATTGAAGTGAC
CGTTTCCCGCAAAGATTTGGGGCAATTAACCCTCGCTTATTGTACTTCGATTCATAAGGCGCAAGGAAGTGAGTTTCCAA
TTGTCGTCTTGCCTATCGTAAAAGGCTACCATCGCATGCTAAGGCGTAATTTAATCTATACAGCTATTACTAGAAGCCGA
TCCTATTTGATCATGTGCGGCGATGCAGATGCTTTTATGAGAGCCATTCAGCAGACAGAAGGGGATCGCCGCTTCTCCCA
CTTAAAGGAAAAATTGATTGAACGACTTGGAGCAGAGAGGGAAGAAGAGGAGCGATCTGAAAGCGAGAAAGCTGCAGTGG
ACTCACTTCAATCCTCAGATCCTGATGATTGGGAAATAGATGAGACGTTAAACGAGGAAGAAGACCCATTCTTAAATCTA
TAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-726)

AAA domain (AAA_30)

(344-541)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.136

95.75

0.538