Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RAB72_RS22735 Genome accession   NZ_CP132979
Coordinates   4507058..4507822 (+) Length   254 a.a.
NCBI ID   WP_001136236.1    Uniprot ID   A7ZT17
Organism   Escherichia coli strain ARS-C101     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4502058..4512822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB72_RS22715 acpT 4503012..4503599 (+) 588 WP_000285784.1 4'-phosphopantetheinyl transferase AcpT -
  RAB72_RS22720 nikA 4503710..4505284 (+) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  RAB72_RS22725 nikB 4505284..4506228 (+) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  RAB72_RS22730 nikC 4506225..4507058 (+) 834 WP_001008968.1 nickel ABC transporter permease subunit NikC -
  RAB72_RS22735 amiE 4507058..4507822 (+) 765 WP_001136236.1 nickel import ATP-binding protein NikD Regulator
  RAB72_RS22740 nikE 4507819..4508625 (+) 807 WP_000173666.1 nickel import ATP-binding protein NikE -
  RAB72_RS22745 nikR 4508631..4509032 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  RAB72_RS22750 - 4509152..4509511 (-) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  RAB72_RS22755 - 4509508..4509738 (-) 231 WP_042014162.1 type II toxin-antitoxin system HicA family toxin -
  RAB72_RS22760 yhhJ 4509842..4510966 (-) 1125 WP_001314210.1 ABC transporter permease -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26833.42 Da        Isoelectric Point: 6.5992

>NTDB_id=797597 RAB72_RS22735 WP_001136236.1 4507058..4507822(+) (amiE) [Escherichia coli strain ARS-C101]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=797597 RAB72_RS22735 WP_001136236.1 4507058..4507822(+) (amiE) [Escherichia coli strain ARS-C101]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398