Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RAB72_RS22000 Genome accession   NZ_CP132979
Coordinates   4352168..4352635 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain ARS-C101     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4347168..4357635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB72_RS21955 rplP 4347278..4347688 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  RAB72_RS21960 rpsC 4347701..4348402 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  RAB72_RS21965 rplV 4348420..4348752 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  RAB72_RS21970 rpsS 4348767..4349045 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  RAB72_RS21975 rplB 4349062..4349883 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  RAB72_RS21980 rplW 4349901..4350203 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  RAB72_RS21985 rplD 4350200..4350805 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  RAB72_RS21990 rplC 4350816..4351445 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  RAB72_RS21995 rpsJ 4351478..4351789 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  RAB72_RS22000 pilD 4352168..4352635 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  RAB72_RS22005 bfr 4352632..4353108 (-) 477 WP_000675515.1 bacterioferritin -
  RAB72_RS22010 bfd 4353181..4353375 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  RAB72_RS22015 tuf 4353558..4354742 (-) 1185 WP_000031783.1 elongation factor Tu -
  RAB72_RS22020 fusA 4354813..4356927 (-) 2115 WP_000124700.1 elongation factor G -
  RAB72_RS22025 rpsG 4357024..4357494 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=797592 RAB72_RS22000 WP_000339836.1 4352168..4352635(+) (pilD) [Escherichia coli strain ARS-C101]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=797592 RAB72_RS22000 WP_000339836.1 4352168..4352635(+) (pilD) [Escherichia coli strain ARS-C101]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361