Detailed information NTG0797489

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: PZB78_RS11235
• Genome accession: NZ_CP119073
• Coordinates: 2170082..2172478 (-)
• Length: 798 a.a.
• NCBI ID: WP_059293517.1
• Uniprot ID: A0A9Q2LN59
• Organism: Bacillus halotolerans strain SW207
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2165082..2177478

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PZB78_RS11200 (PZB78_11180)	-	2166150..2166878 (+)	729	WP_254517797.1	amino acid ABC transporter ATP-binding protein	-
PZB78_RS11205 (PZB78_11185)	-	2166901..2167722 (+)	822	WP_024122305.1	transporter substrate-binding domain-containing protein	-
PZB78_RS11210 (PZB78_11190)	-	2167786..2168436 (+)	651	WP_254517798.1	amino acid ABC transporter permease	-
PZB78_RS11215 (PZB78_11195)	-	2168453..2169109 (+)	657	WP_106020184.1	amino acid ABC transporter permease	-
PZB78_RS11220 (PZB78_11200)	-	2169143..2169274 (-)	132	WP_024122308.1	YrzQ family protein	-
PZB78_RS11225 (PZB78_11205)	-	2169296..2169487 (-)	192	WP_010335110.1	hypothetical protein	-
PZB78_RS11230 (PZB78_11210)	-	2169499..2170023 (-)	525	WP_151174396.1	PRC-barrel domain-containing protein	-
PZB78_RS11235 (PZB78_11215)	recD2	2170082..2172478 (-)	2397	WP_059293517.1	ATP-dependent RecD-like DNA helicase	Machinery gene
PZB78_RS11240 (PZB78_11220)	-	2172503..2173159 (-)	657	WP_142396750.1	tetratricopeptide repeat protein	-
PZB78_RS11245 (PZB78_11225)	mnmA	2173208..2174323 (-)	1116	WP_254517799.1	tRNA 2-thiouridine(34) synthase MnmA	-
PZB78_RS11250 (PZB78_11230)	-	2174352..2175494 (-)	1143	WP_254517800.1	cysteine desulfurase family protein	-
PZB78_RS11255 (PZB78_11235)	cymR	2175514..2175930 (-)	417	WP_003225879.1	cysteine metabolism transcriptional regulator CymR	-
PZB78_RS11260 (PZB78_11240)	-	2176132..2177397 (+)	1266	WP_254517801.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 798 a.a.
• Molecular weight: 88967.53 Da
• Isoelectric Point: 4.9855

>NTDB_id=797489 PZB78_RS11235 WP_059293517.1 2170082..2172478(-) (recD2) [Bacillus halotolerans strain SW207]
MQQHPDQLKMEEEPFLKGTVNTVIYHNDANLYTVLKVKVTETSEAIEDKVVSVTGYFPALQEEETYTFYGKTVTHPKFGL
QFQAEHFKKEIPTTKEGVIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADSSVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVRDVEGIGFGKADELGGRMGLSGNHPERIKAAILYTLETT
CLSEGHTYIETKQLIIETQTLLNQSAADGQRITEMDAANAMIALGENKDIVIEDERCYFPSLFFAEQNVAKRVKQIASQT
EYDDQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGASLDPSDYKKD
EAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHEMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRREIKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSAQAAEMDAELAALQKELPFSVHDANIGMEGITPFDFMKEEQL

Nucleotide

• Length: 2397 bp

>NTDB_id=797489 PZB78_RS11235 WP_059293517.1 2170082..2172478(-) (recD2) [Bacillus halotolerans strain SW207]
GTGCAGCAGCACCCGGATCAGCTGAAAATGGAGGAGGAGCCCTTTTTAAAAGGGACAGTAAACACCGTCATTTATCACAA
TGACGCCAATTTATATACTGTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCTATTGAAGATAAAGTCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAAACCGTTACTCACCCAAAGTTCGGACTG
CAATTTCAAGCTGAGCATTTCAAAAAGGAGATCCCGACAACAAAAGAAGGCGTCATTCAGTATTTGTCGAGCGATCTGTT
TGAAGGAATCGGTAAAAAAACCGCTGAAGAGATTGTGAAAAAACTGGGTGACAGTGCGATTAATAAAATTTTGGCTGATT
CTTCAGTCCTTTATGATGTTCCGAGACTGTCAAAAAAGAAAGCTGACACCCTTGCCGGTGCTTTGCAGCGGCATCAGGGA
CTGGAGCAAATTATGATTTCGCTGAATCAATTTGGGTTCGGCCCTCAGCTGTCTATGAAAATCTATCAGGCCTATGAATC
CGAGACGCTGGAGAAAATTCAGGAAAACCCTTATCAGCTTGTGAGAGACGTGGAAGGCATCGGCTTTGGAAAAGCAGATG
AGCTTGGCGGAAGAATGGGGCTCTCAGGGAATCATCCTGAGCGGATAAAAGCGGCTATTTTGTACACGCTTGAAACGACA
TGCCTTTCAGAAGGGCATACGTACATAGAAACGAAGCAGCTGATTATCGAAACCCAAACGCTGTTAAATCAGTCAGCGGC
AGATGGACAGCGCATTACAGAAATGGATGCCGCTAATGCAATGATTGCGCTTGGAGAGAATAAGGATATTGTCATTGAAG
ATGAACGATGTTACTTTCCGTCGCTGTTTTTCGCTGAACAAAATGTTGCAAAGCGTGTGAAACAGATCGCAAGCCAAACC
GAATATGACGACCAGTTTCCTGAATCAGAATTCCTTCTGGCTTTAGGGGAATTGGAAGAGCGTATGAATGTTCAGTACGC
GCCGAGTCAGAAGGAAGCGATACAAAAAGCGCTGTCGTCACCGATGCTTCTTTTAACGGGAGGACCGGGTACCGGTAAAA
CAACGGTCATCAGAGGCATTGTGGAATTGTATGGAGAACTCCACGGTGCTTCGCTTGATCCGTCGGATTATAAAAAAGAT
GAAGCCTTTCCGATTGTGCTGGCCGCGCCTACAGGTAGAGCGGCGAAACGAATGAGTGAGTCAACGGGTCTTCCGGCGGT
TACGATACATCGGCTGCTCGGCTGGAACGGCGCGGAAGGATTTACTCATACAGAGGACCAGCCGATTGAAGGGAAGCTTT
TGATTATCGATGAAGCGAGTATGCTCGATATATGGCTTGCGAATCATTTGTTCAAAGCGATCCCTGACCATATTCAAATC
ATCATTGTCGGAGACGAAGACCAGCTGCCTTCCGTCGGACCCGGTCAAGTGCTCAGAGACCTTTTGGCATCCCAGGTGAT
TCCGACCGTAAGACTGACAGACATCTACCGGCAAGCGGAAGGATCGTCGATTGTCGAGCTTGCCCACGAGATGAAAAACG
GGCTGCTTCCGAACAACCTGACGGCCCCGACAAAGGATCGTTCCTTTATTCGCTGCGGTGGTTCGCAAATTAAAGAAGTG
GTTGAGAAGGTTGTTGCGAATGCATTGAAAAAAGGATATACGGCAAAAGATATTCAGGTCCTCGCACCGATGTACAGAGG
GAAAGCCGGAATCAATGAGCTGAATGTGATGCTGCAGGATATTTTAAACCCTCCAAAAGAAAAGCGGAGGGAAATTAAGT
TCGGTGACGTTGTCTATAGAACCGGGGATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTGTTTAACGGCGAT
ATTGGAGAAATCACTTCAATTTTCTACGCGAAGGAAAATACAGAAAAAGAAGACATGGCTGTTGTCTCTTTTGACGGCAA
TGAAATGACGTTTACGAAAAAAGACTTCAGTCAGTTTACTCATGCGTATTGCTGCTCTATTCATAAATCGCAGGGCAGTG
AATTTCCGATCGTGGTTCTTCCAGTAGTGAAGGGCTACTATAGAATGCTCAGAAGAAACCTTCTATATACCGCCATCACG
AGGGCGAAGAAATTTCTCATTTTATGCGGGGAAGAGGAAGCGCTGGAGTGGGGCGTGAAAAATAATGACGCGACTGTCAG
ACAGACCTCATTAAAAAACAGGCTGTCAGCGCAGGCGGCTGAAATGGATGCTGAGCTTGCGGCTTTGCAAAAAGAGCTCC
CGTTCAGCGTGCACGACGCAAATATCGGAATGGAAGGCATTACGCCATTCGATTTTATGAAAGAAGAACAGCTGTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (346-553)

• Helix-hairpin-helix containing domain (HHH_RecD2) (158-248)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (594-662)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (681-729)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	96.11	99.875	0.96