Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RBB89_RS29435 Genome accession   NZ_CP132949
Coordinates   6284835..6285431 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain IPA34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6279835..6290431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB89_RS29415 (RBB89_29420) aroK 6280966..6281484 (-) 519 WP_003095833.1 shikimate kinase AroK -
  RBB89_RS29420 (RBB89_29425) pilQ 6281496..6283640 (-) 2145 WP_019726987.1 type 4a pilus secretin PilQ Machinery gene
  RBB89_RS29425 (RBB89_29430) comL/pilP 6283694..6284218 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  RBB89_RS29430 (RBB89_29435) pilO 6284215..6284838 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  RBB89_RS29435 (RBB89_29440) pilN 6284835..6285431 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  RBB89_RS29440 (RBB89_29445) pilM 6285431..6286495 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  RBB89_RS29445 (RBB89_29450) - 6286680..6289151 (+) 2472 WP_019726988.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=797438 RBB89_RS29435 WP_003095839.1 6284835..6285431(-) (pilN) [Pseudomonas aeruginosa strain IPA34]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=797438 RBB89_RS29435 WP_003095839.1 6284835..6285431(-) (pilN) [Pseudomonas aeruginosa strain IPA34]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAAGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369