Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RBB55_RS17705 Genome accession   NZ_CP132915
Coordinates   3673056..3674321 (-) Length   421 a.a.
NCBI ID   WP_001285406.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3668056..3679321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB55_RS17675 (RBB55_17700) pncA 3668277..3668921 (-) 645 WP_032024967.1 bifunctional nicotinamidase/pyrazinamidase -
  RBB55_RS17680 (RBB55_17705) dapA 3669251..3670144 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  RBB55_RS17685 (RBB55_17710) - 3670160..3670762 (+) 603 WP_001177091.1 hypothetical protein -
  RBB55_RS17690 (RBB55_17715) purC 3670800..3671519 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  RBB55_RS17695 (RBB55_17720) - 3671712..3671915 (+) 204 WP_377802880.1 hypothetical protein -
  RBB55_RS17700 (RBB55_17725) - 3672201..3673040 (+) 840 WP_000349494.1 formate/nitrite transporter family protein -
  RBB55_RS17705 (RBB55_17730) rarA 3673056..3674321 (-) 1266 WP_001285406.1 replication-associated recombination protein A Machinery gene
  RBB55_RS17710 (RBB55_17735) - 3674427..3675599 (-) 1173 WP_005134467.1 PQQ-dependent sugar dehydrogenase -
  RBB55_RS17715 (RBB55_17740) - 3675709..3676167 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  RBB55_RS17720 (RBB55_17745) - 3676362..3676520 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  RBB55_RS17725 (RBB55_17750) - 3676692..3677429 (+) 738 WP_005134465.1 dienelactone hydrolase family protein -
  RBB55_RS17730 (RBB55_17755) - 3677617..3677979 (+) 363 WP_000130110.1 HIT family protein -
  RBB55_RS17735 (RBB55_17760) mutY 3678120..3679154 (+) 1035 WP_239955269.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46945.60 Da        Isoelectric Point: 5.8354

>NTDB_id=797353 RBB55_RS17705 WP_001285406.1 3673056..3674321(-) (rarA) [Acinetobacter baumannii strain A207]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=797353 RBB55_RS17705 WP_001285406.1 3673056..3674321(-) (rarA) [Acinetobacter baumannii strain A207]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTAAATACGGGCGTA
AAAGAATTACGTGAGGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTAATAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTGTTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCGAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.303

95.487

0.375