Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PYW44_RS06180 Genome accession   NZ_CP118982
Coordinates   1272211..1274607 (+) Length   798 a.a.
NCBI ID   WP_021339130.1    Uniprot ID   A0AAP7IDD5
Organism   Staphylococcus equorum strain DSM 20674     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1267211..1279607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW44_RS06160 sal 1267470..1269101 (+) 1632 WP_107510893.1 Sal family ABC-F type ribosomal protection protein -
  PYW44_RS06165 - 1269162..1270304 (+) 1143 WP_021339127.1 cysteine desulfurase family protein -
  PYW44_RS06170 mnmA 1270305..1271417 (+) 1113 WP_115075987.1 tRNA 2-thiouridine(34) synthase MnmA -
  PYW44_RS06175 - 1271542..1272207 (+) 666 WP_002507435.1 tetratricopeptide repeat protein -
  PYW44_RS06180 recD2 1272211..1274607 (+) 2397 WP_021339130.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PYW44_RS06185 alaS 1274961..1277591 (+) 2631 WP_021339131.1 alanine--tRNA ligase -
  PYW44_RS06190 - 1277661..1277921 (+) 261 WP_002507438.1 IreB family regulatory phosphoprotein -
  PYW44_RS06195 ruvX 1277925..1278353 (+) 429 WP_002507439.1 Holliday junction resolvase RuvX -
  PYW44_RS06200 - 1278370..1278702 (+) 333 WP_002507440.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89790.56 Da        Isoelectric Point: 4.5127

>NTDB_id=797146 PYW44_RS06180 WP_021339130.1 1272211..1274607(+) (recD2) [Staphylococcus equorum strain DSM 20674]
MEDPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIETNEDFDSMPTIVGFFPEIAEGDVYTFKGQVVTHSKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPAVLEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLKVVENTPYQLVYDVKGIGFNKADALARNVGIQFNDDERLKAGLLYVLEEECIKQG
HTYLPTNNVMEMTQDMLSQPPAEMIDAQQLINVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFTHTNKLKEIE
QSELLLEIGEIENRNEVTYADSQRDALQTAINTKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYQNDDYPVVLA
APTGRASKRLAESTGLEAMTIHRLIGWNQDTQPEDILENEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGEAIDITQRFHDRNFIKCTTEQIPTVVEKVVTSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQDILNPKDKDTREIEFGDVVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDILVVDFEGNEITFVRKDLLELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLIFL
GDPQAFDIGLKTHGQVRMTQLCTFLKTYFNNEVTEDAEDSIAISKTIDADIILTEDNIFKINPMINMGDISPYDFVED

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=797146 PYW44_RS06180 WP_021339130.1 1272211..1274607(+) (recD2) [Staphylococcus equorum strain DSM 20674]
ATGGAAGACCCTACATTATTTAACAATTCAATGATTAAAGGAACCGTGGATGCTATTTTATTTCAAAATAAAGAAAATTT
TTATACGGTTTTAAAGGTAGATACAATTGAAACAAATGAAGATTTCGATTCAATGCCTACAATTGTAGGGTTTTTCCCGG
AAATTGCTGAAGGTGATGTCTACACGTTTAAAGGCCAAGTTGTAACACATTCTAAATATGGTAAGCAACTCAAAGCTGAA
ACGTTTGAAAAAGAGTTGCCGCAAACAAAAGAAGCAATCATTAGTTATTTATCCAGCGATCTTTTTAAAGGTATTGGTAA
AAAAACTGCACAAAGTATTGTAAATAAGTTAGGCGAGAATGCCATTAGTGATATATTAAATGATCCTGCTGTTTTAGAAA
AAGTACCGAGTCTACCAAAAAAGAAACAAAAGCAAATCGCAGAACAAATCGCTAGTAATCAAGAAACAGAACAAATCATT
ATACGACTTCACGACTTAGGTTTTGGTCCGAAGCTTGCTATGGCAATATACCAAGCCTATTTAGGTGAGACACTTAAAGT
TGTTGAAAATACACCATACCAATTGGTTTATGATGTAAAAGGAATCGGTTTTAATAAAGCAGATGCTTTAGCACGTAACG
TGGGAATTCAATTTAATGATGATGAACGTCTGAAAGCTGGTTTGTTATATGTTTTAGAAGAAGAATGTATTAAACAAGGC
CATACATATTTACCTACAAATAATGTTATGGAAATGACACAAGATATGTTGTCTCAACCACCAGCAGAAATGATTGATGC
ACAACAACTTATAAATGTATTGCAAGATTTAGTAAATGATACGAAATTAATCCAACAAGAAAATGAAGTTGCTATACCAA
GTTTGTATTATTCAGAGTTGAAAAGTGTTCAAAACTTATATCGCAATTTTACGCATACAAATAAATTAAAAGAAATTGAG
CAATCAGAATTATTGCTTGAAATTGGTGAAATAGAAAACCGTAATGAAGTAACATATGCCGACTCACAAAGAGACGCGCT
ACAAACTGCAATCAATACTAAAATCATGCTACTAACTGGTGGTCCAGGTACTGGTAAAACGACAGTAATCAAAGGTATCG
TAGAGCTATATGCAGAGATTCATGGTTTATCGTTAGACTATGATGATTACCAAAATGACGATTACCCTGTTGTGCTTGCG
GCACCTACCGGCAGAGCATCAAAGCGGCTTGCAGAATCTACAGGATTAGAAGCAATGACGATACATCGGCTCATTGGTTG
GAATCAAGATACACAACCTGAAGATATTTTAGAAAATGAAATATCTGCAAAACTTATTATTATAGATGAGATGTCGATGG
TTGATACATGGCTTTTTCATCAATTTTTGAGTGCAGTACCTATAGACGCACAAGTTATATTAGTAGGTGATGAAGATCAA
TTACCATCTGTTGGTCCTGGACAAGTGTTTAAAGATTTAATCGATTCAAAAGTTATCCCACGTGTCAATTTAACTGAAGT
ATACCGCCAACAAGACGGTTCTAGTATTATTGAGTTGGCACATAGAATGAAATTGGGCGAAGCAATTGATATTACACAGC
GTTTCCATGATCGTAACTTTATCAAATGTACGACTGAACAAATACCCACAGTAGTTGAAAAAGTAGTGACAAGTGCAGTA
AATAAAGGATATGACATGAGTGATATTCAGGTATTAGCACCTATGTATAAAGGTTCCGCAGGTATTAAAAAACTAAATAC
GGTCTTGCAAGATATATTGAACCCTAAAGACAAAGATACTCGAGAAATTGAGTTTGGTGATGTTGTTTTTAGAAAAGGAG
ATAAGGTTTTACAACTTGTGAACCGACCAAGTGATAATATTTTTAATGGTGATATCGGTGTAATCGTAGGTATATTTTGG
GCGAAAGAAAATGCATTAAATAAAGACATACTTGTCGTTGATTTTGAGGGCAATGAAATAACGTTTGTTCGAAAAGATTT
ATTAGAATTAACACATGCATATTGCACATCTATTCATAAGTCTCAGGGTTCTGAGTTTCCTATAGTCATCATGCCAATGG
TCAAGCAATATTTTAGAATGTTACAAAAACCTATTTTATATACAGGGCTTACTCGAGCGAAACAGTCGCTTATATTTTTA
GGTGACCCACAAGCATTTGATATTGGATTGAAAACACACGGTCAAGTGAGAATGACACAATTATGTACATTTCTGAAAAC
TTATTTCAATAACGAAGTAACTGAAGATGCTGAAGATAGTATTGCAATCAGTAAAACAATTGATGCAGATATCATTTTGA
CTGAAGATAATATCTTTAAAATTAACCCTATGATCAACATGGGAGACATTTCACCATATGACTTTGTAGAAGATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-718)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.251

100

0.503