Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PYW31_RS06270 Genome accession   NZ_CP118976
Coordinates   1282362..1284749 (+) Length   795 a.a.
NCBI ID   WP_046836611.1    Uniprot ID   -
Organism   Staphylococcus succinus strain DSM 14617     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1277362..1289749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW31_RS06250 sal 1277607..1279238 (+) 1632 WP_082104707.1 Sal family ABC-F type ribosomal protection protein -
  PYW31_RS06255 - 1279300..1280442 (+) 1143 WP_046836614.1 cysteine desulfurase family protein -
  PYW31_RS06260 mnmA 1280443..1281555 (+) 1113 WP_046836613.1 tRNA 2-thiouridine(34) synthase MnmA -
  PYW31_RS06265 - 1281693..1282358 (+) 666 WP_046836612.1 tetratricopeptide repeat protein -
  PYW31_RS06270 recD2 1282362..1284749 (+) 2388 WP_046836611.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PYW31_RS06275 alaS 1285104..1287734 (+) 2631 WP_046836610.1 alanine--tRNA ligase -
  PYW31_RS06280 - 1287803..1288063 (+) 261 WP_046836609.1 IreB family regulatory phosphoprotein -
  PYW31_RS06285 ruvX 1288067..1288495 (+) 429 WP_046836608.1 Holliday junction resolvase RuvX -
  PYW31_RS06290 - 1288512..1288838 (+) 327 WP_046836607.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89324.93 Da        Isoelectric Point: 4.5571

>NTDB_id=797078 PYW31_RS06270 WP_046836611.1 1282362..1284749(+) (recD2) [Staphylococcus succinus strain DSM 14617]
MEDPTLFTSSMIKGTVDAILFQNKENFYTVLKVDMIESNESFDSMPTIVGFFPEITEGDVYTFKGQVVTHSKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAINDILNNPEILEKVPGLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYMGDTLDIVKSKPYQLVYDVKGIGFNKADTLARNVGIQFNDAERLKAGLLYVLEEACIKQG
HTYLPTNNVLEMTQDMLSQPPAEVIDTQQLETVLQDLVSDTKLIQQENEVAIPSLYYSELKSVQNLYRNFSYTNKLKEIE
QSDLLLEIGDIEERNKVSYADSQREALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYQNDVYPVVLA
APTGRASKRLADATGLEAMTIHRLIGWNQDTSPEDILDNEISAKLIIIDEMSMVDTWLFHQFMSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGESIDITQRFHDRNFINCSTDQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQHILNPKEKDTREIEFGDVFFRKGDKVLQLVNRPSDNIFNGDIGEIVGIFW
AKENALNKDVLVVDFEGNEITFTRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCSLLKAYFNNETISEDEDINQSIDSETVLTESTMFKIDPMINMGTISPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=797078 PYW31_RS06270 WP_046836611.1 1282362..1284749(+) (recD2) [Staphylococcus succinus strain DSM 14617]
ATGGAAGACCCTACATTATTCACGAGTTCTATGATTAAAGGCACTGTTGATGCAATTTTATTTCAAAATAAAGAGAACTT
TTATACAGTTTTAAAAGTAGATATGATTGAATCAAATGAATCATTCGATTCAATGCCTACAATTGTAGGGTTTTTTCCAG
AAATAACTGAAGGCGATGTCTATACTTTTAAAGGTCAAGTTGTTACCCATTCAAAATATGGCAAACAATTAAAAGCTGAA
ACATTTGAAAAAGAGTTACCACAAACGAAAGAAGCGATTATAAGTTATTTATCTAGTGATTTATTTAAAGGTATAGGAAA
AAAAACAGCACAAAGCATCGTAAATAAATTAGGCGAAAATGCAATAAATGATATCTTAAATAATCCAGAAATATTAGAAA
AAGTACCAGGGTTACCTAAGAAAAAGCAAAAGCAAATTGCTGAGCAGATTGCGAGCAATCAAGAAACTGAACAAATCATT
ATACGTTTACATGATTTAGGATTTGGACCTAAACTTGCAATGGCTATTTATCAAGCTTACATGGGAGATACTCTTGACAT
AGTTAAAAGCAAACCGTATCAACTTGTTTATGATGTAAAAGGTATTGGCTTTAACAAGGCAGATACTTTAGCTAGGAATG
TTGGTATACAGTTTAATGATGCTGAACGTCTCAAGGCAGGCTTACTATATGTATTAGAAGAAGCGTGTATTAAACAAGGT
CATACCTATTTACCAACGAACAATGTATTAGAAATGACTCAAGATATGTTATCGCAGCCACCAGCTGAGGTGATTGACAC
GCAACAATTAGAAACAGTATTACAAGATTTAGTTAGTGATACTAAGCTAATTCAACAAGAGAATGAAGTTGCTATACCCA
GCCTTTATTATTCAGAACTTAAAAGTGTACAAAATTTATATCGTAATTTCAGCTATACCAACAAATTAAAAGAGATTGAA
CAATCGGACTTGTTACTTGAAATTGGCGATATTGAAGAAAGAAATAAAGTGTCATATGCAGACTCACAAAGAGAAGCGTT
ACAAACTGCAATTAATTCTAAAGTAATGTTACTTACTGGCGGTCCAGGTACAGGAAAAACGACAGTGATAAAAGGTATTG
TTGAGTTATACGCTGAAATTCATGGTTTATCTTTGGATTATGATGATTATCAAAACGATGTTTATCCAGTGGTATTAGCA
GCGCCAACCGGAAGAGCTTCAAAACGATTGGCTGATGCCACGGGCTTAGAGGCAATGACAATCCATAGATTAATTGGATG
GAATCAGGATACATCACCAGAAGATATTTTAGATAATGAAATTTCAGCCAAATTGATTATTATAGACGAAATGTCTATGG
TTGATACATGGTTGTTTCATCAATTTATGAGTGCTGTGCCGATAGATGCGCAAGTCATTCTAGTAGGTGATGAGGATCAA
TTACCTTCTGTTGGACCAGGACAAGTATTTAAAGATTTAATTGATTCTAAGGTCATACCTCGTGTGAATCTGACCGAAGT
CTATCGTCAACAAGATGGCTCAAGTATTATTGAATTGGCTCACAGAATGAAGTTAGGTGAGTCCATAGATATTACGCAGC
GATTTCATGATCGTAATTTTATTAATTGTAGTACAGATCAAATCCCGTCTGTAGTAGAAAAAGTAGTGTCAAGCGCAGTG
AATAAAGGCTATGATATGAGTGATATACAAGTATTGGCTCCTATGTACAAGGGATCGGCCGGTATTAAAAAGTTGAATAC
TGTATTACAACACATCTTAAATCCTAAAGAAAAAGATACACGAGAAATAGAATTTGGTGATGTGTTCTTTAGAAAAGGTG
ATAAAGTATTGCAATTGGTAAATAGACCGAGTGATAATATTTTTAATGGTGATATCGGCGAAATTGTTGGTATATTCTGG
GCAAAAGAAAATGCTTTAAATAAAGATGTACTCGTGGTTGATTTCGAGGGGAACGAAATTACATTTACACGTCAAGATTT
AATGGAATTGACACATGCTTATTGTACCTCAATTCATAAATCGCAAGGTTCTGAATTTCCAATTGTAATCATGCCGATGG
TAAAACAATACTTTAGAATGTTACAAAAGCCTATTTTATATACGGGTCTTACACGAGCTAAGCAATCTTTAGTGTTTTTG
GGGGACCCACAAGCGTTTGATATAGGATTGAAAACACATGGACAAGTGAGAATGACGCAACTATGTTCACTCTTGAAAGC
TTATTTCAATAATGAAACAATTTCAGAAGACGAAGATATCAATCAAAGTATTGATTCAGAAACAGTATTAACAGAATCTA
CAATGTTTAAAATTGATCCAATGATAAATATGGGAACGATTTCTCCATATGATTTCGTAGAAGATTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix domain (HHH_5)

(103-149)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.874

99.874

0.498