Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PYW35_RS05800 Genome accession   NZ_CP118974
Coordinates   1152134..1154512 (+) Length   792 a.a.
NCBI ID   WP_103323213.1    Uniprot ID   -
Organism   Mammaliicoccus vitulinus strain DSM 15615     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1147134..1159512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW35_RS05780 sal 1147443..1149068 (+) 1626 WP_103323216.1 Sal family ABC-F type ribosomal protection protein -
  PYW35_RS05785 - 1149128..1150276 (+) 1149 WP_103323215.1 cysteine desulfurase family protein -
  PYW35_RS05790 mnmA 1150269..1151378 (+) 1110 WP_103323214.1 tRNA 2-thiouridine(34) synthase MnmA -
  PYW35_RS05795 - 1151463..1152131 (+) 669 WP_016910819.1 tetratricopeptide repeat protein -
  PYW35_RS05800 recD2 1152134..1154512 (+) 2379 WP_103323213.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PYW35_RS05805 alaS 1154763..1157393 (+) 2631 WP_103323212.1 alanine--tRNA ligase -
  PYW35_RS05810 - 1157461..1157730 (+) 270 WP_103323211.1 IreB family regulatory phosphoprotein -
  PYW35_RS05815 ruvX 1157723..1158151 (+) 429 WP_016910823.1 Holliday junction resolvase RuvX -
  PYW35_RS05820 - 1158170..1158475 (+) 306 WP_016910824.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 792 a.a.        Molecular weight: 89941.33 Da        Isoelectric Point: 4.7305

>NTDB_id=797043 PYW35_RS05800 WP_103323213.1 1152134..1154512(+) (recD2) [Mammaliicoccus vitulinus strain DSM 15615]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVINHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEDALKKIIEEPEVLKEIPKLNKQKRDTIAAAIRENQAIERIM
IKLNELGFGPKLAMSIYQVYKEETLNIIKQTPYRLVMDINGIGFQRADQIAEQVGISKDHHDRLVAGISYFLDQQSLQNG
HTFLPVDILINGAYELLNHNQPEVVNKDQLNSVILEMSEENKLIIEDNNCFLPSLYYSEAKSVQIIHRLYQHQEELKDIE
KSDLQLHIGEIEDMNDVSYADGQKLALETAINNKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDHAQIIFVGDED
QLPSVGPGQIFKDLIESKVIPRVNLKEVYRQQEGSSIIDLAHKIKNGLPVSINEKHHDRSFIPCSSNQIATVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDETTRYLEYGDIEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVI
CGEENAFNQGIQTLGHGRMTSFDTKLKTYFQTDTENTNEPSEMKNLILTEDNMYEIDPMINMKDKTPYDFMK

Nucleotide


Download         Length: 2379 bp        

>NTDB_id=797043 PYW35_RS05800 WP_103323213.1 1152134..1154512(+) (recD2) [Mammaliicoccus vitulinus strain DSM 15615]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTAAAAGGTGAAGTTATTAGAATCTTATTTCAAAATAGTGATAACTA
TTATACCGTTATAAAAGTTGATGTGATGGACTCAAATGAAGATTTCGATCAAGAAGTCACAATTGTTGGTTATCTTCCTC
AAATAGTAGAAGGCGAAACATATCTTTTTAAAGGTAAAGTAATTAATCATCCAAAGTATGGTAAGCAATTACAAGCTGAA
ACATTCGAAAAAGAATTGCCACAAACTAAACAAGGCGTTATTCATTATTTATCTAGTGATTTATTTAAAGGTATAGGAAA
GAAAACTGCAGAAACAATTGTTGATAAATTAGGTGAAGACGCACTTAAAAAAATAATTGAAGAGCCAGAAGTATTGAAAG
AAATACCTAAATTAAACAAACAAAAACGAGATACGATTGCAGCAGCTATACGTGAGAATCAAGCTATAGAACGCATCATG
ATTAAACTGAATGAACTTGGTTTTGGACCGAAACTTGCTATGTCTATATATCAAGTTTATAAGGAAGAAACGCTTAATAT
TATTAAACAAACACCCTATCGATTAGTTATGGATATTAACGGTATTGGCTTCCAAAGAGCCGACCAAATTGCCGAACAAG
TAGGTATTTCAAAGGACCATCATGATCGACTTGTCGCTGGAATCAGCTATTTCTTAGATCAACAATCTTTACAAAATGGT
CATACATTTTTGCCTGTTGATATATTAATTAATGGTGCATATGAATTGTTAAATCATAACCAACCAGAAGTCGTGAATAA
AGATCAGCTGAACAGTGTTATTTTAGAGATGAGTGAAGAAAACAAATTAATAATTGAAGATAATAATTGTTTTTTACCTT
CTCTATATTATTCTGAAGCTAAAAGCGTTCAAATTATCCATCGTCTTTATCAACATCAAGAAGAACTTAAAGATATAGAA
AAAAGTGATTTGCAGTTACACATTGGTGAAATTGAAGATATGAATGACGTGTCATATGCAGATGGTCAAAAGTTAGCATT
AGAAACAGCGATAAACAACAAGATGATGCTACTAACAGGTGGACCTGGTACTGGTAAGACGACAGTTATAAGAGGGATTT
GTGAATTGTATTCTGAAATTCATGGTGTCAGTTTAAATTATGATGATTACCAAGAAGGTACTGACTTTCCTATCGTATTA
GCAGCACCTACAGGACGTGCAGCGAAACGACTGAGTGAATCAACAGGTTTAGAAGCTATGACCATTCATAGGCTAATAGG
TTGGAGTAAAGATACACAACCGGACGATGTGCTTGATAATGATATACATGCACATTTAATTATTTTAGATGAAATGTCCA
TGGTAGATACTTGGTTAATGTACCAGTTTCTACGTGCTGTGCCAGATCATGCTCAAATAATCTTTGTAGGAGACGAAGAT
CAGTTACCTTCAGTTGGACCAGGACAGATTTTCAAAGATTTGATTGAATCTAAAGTGATACCTAGAGTTAATTTAAAAGA
AGTTTATAGACAGCAAGAAGGTTCTTCAATTATTGATTTAGCGCACAAAATAAAAAATGGTTTACCAGTATCTATTAATG
AAAAACATCATGATCGATCCTTTATTCCGTGTAGTAGTAATCAAATTGCAACAGTAGTTGAAAAAGTTGTCCAAGGTGCA
GTAAATAAAGGTTATAACATGCAAGATATACAAGTGTTAGCCCCAATTTATCGCGGCCCTGCAGGTATTAATAAACTGAA
TGAGTTATTACAAGATATTTTGAACCCGAAAGATGAAACAACTCGCTATCTTGAATATGGAGATATCGAATATAGAGAAA
ATGATAAAGTGTTACAGCTCATAAATCGACCAGACGATAATGTATTTAATGGTGATATTGGCGTTGTAACAGGCGTTTAT
AAAGCAGAAGAAAATGCGTTAGGTAAAGATGTAGTCATTGTAGACTATGAAGGAAATGATATTACTTATACGAAACAAGA
TTTATCAGAAATAACACATGCTTATTGTTGTTCCATACACAAATCGCAAGGTTCTGAGTTTCCAATTGTAATCATGCCTA
TAGTTAGACAATACTTTAGAATGTTACAGAAGAACATTTTGTATACAGGACTAACCCGAGCTAAACAATCATTGGTCATT
TGCGGAGAAGAGAATGCTTTTAATCAAGGTATACAAACGTTAGGGCATGGACGAATGACGTCATTTGATACTAAATTAAA
AACATATTTTCAAACGGATACTGAAAATACAAACGAACCTAGTGAAATGAAAAACTTAATTTTAACAGAAGATAATATGT
ATGAAATTGACCCGATGATTAACATGAAAGATAAAACACCTTATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.686

100

0.5