Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   PYW37_RS11985 Genome accession   NZ_CP118969
Coordinates   2340856..2341179 (-) Length   107 a.a.
NCBI ID   WP_032943614.1    Uniprot ID   -
Organism   Lactococcus lactis strain DSM 20481     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2335856..2346179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW37_RS11945 - 2336383..2337192 (-) 810 WP_014570791.1 metal ABC transporter permease -
  PYW37_RS11950 - 2337185..2337922 (-) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  PYW37_RS11955 - 2338099..2338941 (-) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  PYW37_RS11960 - 2338938..2339375 (-) 438 WP_003129992.1 zinc-dependent MarR family transcriptional regulator -
  PYW37_RS11965 comGG 2339465..2339749 (-) 285 WP_025017139.1 competence type IV pilus minor pilin ComGG Machinery gene
  PYW37_RS11970 comGF 2339788..2340234 (-) 447 WP_032943612.1 competence type IV pilus minor pilin ComGF Machinery gene
  PYW37_RS11975 comGE 2340197..2340493 (-) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  PYW37_RS11980 comGD 2340465..2340881 (-) 417 WP_025017137.1 competence type IV pilus minor pilin ComGD Machinery gene
  PYW37_RS11985 comGC 2340856..2341179 (-) 324 WP_032943614.1 competence type IV pilus major pilin ComGC Machinery gene
  PYW37_RS11990 comGB 2341253..2342272 (-) 1020 WP_044009599.1 competence type IV pilus assembly protein ComGB Machinery gene
  PYW37_RS11995 comGA 2342220..2343158 (-) 939 WP_031561106.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12321.22 Da        Isoelectric Point: 4.7146

>NTDB_id=796977 PYW37_RS11985 WP_032943614.1 2340856..2341179(-) (comGC) [Lactococcus lactis strain DSM 20481]
MCEKKCRQKELKAFTLIEMLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQAQLYELDHDDEKPSLSELLNA
GMITQKQISAYDNYYDQNKNEERNFND

Nucleotide


Download         Length: 324 bp        

>NTDB_id=796977 PYW37_RS11985 WP_032943614.1 2340856..2341179(-) (comGC) [Lactococcus lactis strain DSM 20481]
ATTTGTGAAAAAAAATGCCGTCAGAAAGAGCTAAAAGCTTTTACTTTGATAGAGATGTTAATTGTACTAGCTATTATTAG
TATTTTGATATTACTATTTGTTCCAAATTTAATTAAAGAAAAATCACAAGTTCAAAAAACTGGAGAAGCGGCAGTTGTAA
AAGTAGTAGAAAGTCAAGCTCAACTTTATGAATTAGATCATGATGATGAGAAGCCGAGTCTGTCAGAATTGCTCAACGCT
GGGATGATTACTCAAAAACAAATTTCTGCTTACGATAATTACTATGATCAGAACAAAAATGAAGAACGAAATTTTAATGA
CTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Lactococcus lactis subsp. cremoris KW2

85.577

97.196

0.832
  comGC/cglC Streptococcus mitis SK321

56.436

94.393

0.533
  comYC Streptococcus mutans UA159

55.446

94.393

0.523
  comYC Streptococcus mutans UA140

55.446

94.393

0.523
  comYC Streptococcus gordonii str. Challis substr. CH1

56.566

92.523

0.523
  comGC/cglC Streptococcus pneumoniae TIGR4

53.922

95.327

0.514
  comGC/cglC Streptococcus pneumoniae Rx1

53.922

95.327

0.514
  comGC/cglC Streptococcus pneumoniae D39

53.922

95.327

0.514
  comGC/cglC Streptococcus pneumoniae R6

53.922

95.327

0.514
  comGC/cglC Streptococcus mitis NCTC 12261

58.427

83.178

0.486
  comYC Streptococcus suis isolate S10

56.818

82.243

0.467