Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   PYW33_RS05615 Genome accession   NZ_CP118963
Coordinates   1176151..1176792 (+) Length   213 a.a.
NCBI ID   WP_004645462.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain DSM 2403     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1171151..1181792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW33_RS05580 kdsB 1171478..1172239 (+) 762 WP_004645470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PYW33_RS05585 - 1172254..1173234 (+) 981 WP_004645469.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  PYW33_RS05590 - 1173250..1173591 (+) 342 WP_004645468.1 PilZ domain-containing protein -
  PYW33_RS05595 - 1173619..1174392 (+) 774 WP_004645467.1 TatD family hydrolase -
  PYW33_RS05600 - 1174433..1175047 (+) 615 WP_004645466.1 TetR/AcrR family transcriptional regulator -
  PYW33_RS05605 - 1175062..1175613 (+) 552 WP_004645465.1 type II secretion system protein -
  PYW33_RS05610 xcpV 1175603..1176154 (+) 552 WP_370940780.1 type II secretion system minor pseudopilin GspI Machinery gene
  PYW33_RS05615 xcpW 1176151..1176792 (+) 642 WP_004645462.1 type II secretion system minor pseudopilin GspJ Machinery gene
  PYW33_RS05620 gspK 1176799..1177770 (+) 972 WP_004645461.1 type II secretion system minor pseudopilin GspK -
  PYW33_RS05625 - 1177923..1178519 (+) 597 WP_004278864.1 6-pyruvoyl trahydropterin synthase family protein -
  PYW33_RS05630 ung 1178566..1179279 (+) 714 WP_004645460.1 uracil-DNA glycosylase -
  PYW33_RS05635 - 1179276..1180211 (+) 936 Protein_1068 enoyl-CoA hydratase/isomerase family protein -
  PYW33_RS05640 - 1180266..1181198 (+) 933 WP_000743272.1 IS5-like element IS17 family transposase -
  PYW33_RS05645 - 1181254..1181445 (+) 192 Protein_1070 enoyl-CoA hydratase/isomerase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24221.39 Da        Isoelectric Point: 4.5683

>NTDB_id=796920 PYW33_RS05615 WP_004645462.1 1176151..1176792(+) (xcpW) [Acinetobacter lwoffii strain DSM 2403]
MKPKGFTLVELLVAIAIFAVLSALGWKVFDYIVKTKDQNAVHEQRLGQLQETYQQILRDTVQAVPLTANINGDIQPALVL
QNGRFNFSKTGVTDPLEEGISPDERIEYQYRADEQKLYRLKYRNLNQAGQDQPESSVLLSEVEQFQIIVLNPNELTQWPD
ASADLNQLEHKQRLPKGIKINLTVNGVSYEWMFSLLNTDFLLDTQNTGQPSSE

Nucleotide


Download         Length: 642 bp        

>NTDB_id=796920 PYW33_RS05615 WP_004645462.1 1176151..1176792(+) (xcpW) [Acinetobacter lwoffii strain DSM 2403]
ATGAAGCCTAAAGGATTTACCCTGGTCGAATTATTGGTTGCGATTGCGATCTTTGCAGTGCTGTCTGCTTTGGGCTGGAA
AGTTTTTGATTATATTGTCAAAACCAAAGATCAAAATGCAGTACATGAACAGCGTCTAGGTCAGCTACAGGAAACCTATC
AGCAAATTTTACGGGATACGGTACAGGCAGTCCCTTTAACGGCCAATATTAATGGTGATATTCAACCGGCTCTGGTTTTG
CAAAATGGCCGTTTTAATTTTAGTAAAACTGGCGTGACTGATCCTCTGGAGGAGGGTATTTCGCCAGATGAACGCATTGA
ATATCAGTATCGGGCCGATGAGCAGAAACTTTATCGCTTGAAATACCGGAATCTAAATCAGGCAGGTCAAGATCAGCCCG
AATCCAGTGTTTTATTGTCGGAAGTGGAACAATTTCAGATCATCGTACTTAATCCGAATGAACTCACGCAATGGCCGGAT
GCTTCTGCTGATCTGAATCAGTTAGAGCATAAACAGCGTTTGCCTAAAGGGATTAAAATCAATTTAACCGTGAATGGTGT
AAGTTATGAATGGATGTTCAGTTTATTGAATACGGACTTTTTGCTTGATACTCAGAACACCGGTCAACCCAGCTCAGAAT
AA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-24)

Type II secretion system (T2SS), protein J (T2SSJ)

(58-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

59.701

94.366

0.563