Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PYW33_RS01735 Genome accession   NZ_CP118963
Coordinates   404532..404957 (+) Length   141 a.a.
NCBI ID   WP_004644984.1    Uniprot ID   N8Q795
Organism   Acinetobacter lwoffii strain DSM 2403     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 399532..409957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW33_RS01720 - 399538..400224 (+) 687 WP_004644981.1 pilus assembly PilX family protein -
  PYW33_RS01725 - 400242..403829 (+) 3588 WP_004644982.1 hypothetical protein -
  PYW33_RS01730 - 403840..404532 (+) 693 WP_004644983.1 type IV pilin protein -
  PYW33_RS01735 comF 404532..404957 (+) 426 WP_004644984.1 type IV pilin protein Machinery gene
  PYW33_RS01740 rpsP 405159..405416 (+) 258 WP_004281198.1 30S ribosomal protein S16 -
  PYW33_RS01745 rimM 405447..405995 (+) 549 WP_004644985.1 ribosome maturation factor RimM -
  PYW33_RS01750 trmD 406023..406757 (+) 735 WP_004644986.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  PYW33_RS01755 rplS 406944..407318 (+) 375 WP_004644987.1 50S ribosomal protein L19 -
  PYW33_RS01760 - 407831..408799 (-) 969 WP_004644988.1 esterase/lipase family protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15578.72 Da        Isoelectric Point: 8.9007

>NTDB_id=796913 PYW33_RS01735 WP_004644984.1 404532..404957(+) (comF) [Acinetobacter lwoffii strain DSM 2403]
MKKYSLAFTLIELMIVVAIIGILAAIAYPSYTQYKIRTNRADVQSEMMQIAQRLQSYYVINHNYTNARLDNGTVSKAYPA
SGSVYTITLAPLDQTWTLTAVPTPNTVQDGNGAVVLNSQGQKCWEKGTTCSVSTSSNWESR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=796913 PYW33_RS01735 WP_004644984.1 404532..404957(+) (comF) [Acinetobacter lwoffii strain DSM 2403]
ATGAAAAAATACTCTTTAGCATTTACTTTAATTGAATTAATGATTGTTGTCGCAATTATTGGCATCTTGGCAGCAATTGC
TTATCCATCTTACACACAGTACAAAATCCGTACCAATCGGGCAGATGTGCAAAGTGAAATGATGCAAATAGCCCAACGGT
TACAGAGTTATTATGTCATCAATCATAATTATACCAACGCAAGATTGGACAATGGCACAGTGAGTAAAGCCTATCCTGCT
TCAGGAAGTGTATATACCATCACCCTTGCGCCACTCGATCAAACTTGGACGCTTACGGCAGTCCCAACCCCGAATACAGT
TCAAGATGGTAATGGAGCAGTGGTGCTAAATAGCCAAGGACAAAAATGTTGGGAGAAAGGAACGACATGCAGTGTTTCTA
CTTCTTCAAATTGGGAAAGTCGTTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-109)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8Q795

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

55.396

98.582

0.546
  pilE Acinetobacter baumannii D1279779

52.941

96.454

0.511