Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QU709_RS36115 Genome accession   NZ_CP132593
Coordinates   8077200..8078294 (+) Length   364 a.a.
NCBI ID   WP_306502739.1    Uniprot ID   -
Organism   Streptomyces sp. YU58 strain SX92     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8072200..8083294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU709_RS36085 (QU709_36100) - 8072893..8073435 (+) 543 WP_306502735.1 hypothetical protein -
  QU709_RS36090 (QU709_36105) pdxS 8073572..8074483 (+) 912 WP_306502736.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  QU709_RS36095 (QU709_36110) pdxT 8074483..8075100 (+) 618 WP_306502737.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  QU709_RS36100 (QU709_36115) - 8075149..8075901 (+) 753 WP_232029752.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QU709_RS36105 (QU709_36120) ruvC 8076045..8076575 (+) 531 WP_232029753.1 crossover junction endodeoxyribonuclease RuvC -
  QU709_RS36110 (QU709_36125) ruvA 8076572..8077174 (+) 603 WP_306502738.1 Holliday junction branch migration protein RuvA -
  QU709_RS36115 (QU709_36130) ruvB 8077200..8078294 (+) 1095 WP_306502739.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QU709_RS36120 (QU709_36135) yajC 8078470..8079009 (+) 540 WP_306502740.1 preprotein translocase subunit YajC -
  QU709_RS36125 (QU709_36140) secD 8079143..8080909 (+) 1767 WP_306502741.1 protein translocase subunit SecD -
  QU709_RS36130 (QU709_36145) secF 8080911..8082032 (+) 1122 WP_306502742.1 protein translocase subunit SecF -
  QU709_RS36135 (QU709_36150) - 8082029..8082577 (+) 549 WP_306502743.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39128.54 Da        Isoelectric Point: 4.8429

>NTDB_id=796839 QU709_RS36115 WP_306502739.1 8077200..8078294(+) (ruvB) [Streptomyces sp. YU58 strain SX92]
MNWDDTADESAAERLVGPAAERLVDSGADREDQAVEAALRPKDLHEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP
GLGKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDYRVDVIVGKGPG
ATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPPELERVIHRSANLLDVEIEADGAAEIAGRSRGTPRIAN
RLLRRVRDYAQVKADGLITRDIAAAALAVYEVDARGLDRLDRGVLQALLRLFGGGPVGLSTLAVAVGEERETVEEVAEPF
LVREGLLARTPRGRVATPAAWAHLGLTPPRSASTGNGQQDLFGT

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=796839 QU709_RS36115 WP_306502739.1 8077200..8078294(+) (ruvB) [Streptomyces sp. YU58 strain SX92]
ATGAACTGGGACGACACGGCCGACGAGAGTGCCGCCGAGCGGCTCGTCGGCCCCGCCGCGGAGCGGCTGGTGGACTCCGG
CGCCGACCGGGAGGACCAGGCCGTCGAGGCCGCCCTGCGGCCCAAGGACCTGCACGAGTTCATCGGGCAGGAGAAGGTCC
GCGAACAGCTCGACCTGGTCCTCCGGGCGGCCCGCGCCCGCGGCGCCACCGCCGACCACGTCCTTCTCTCCGGCGCCCCC
GGTCTCGGCAAGACCACCCTGTCGATGATCATCGCGGCCGAGATGAACGCCCCGATCCGCATCACCAGCGGCCCCGCCAT
CCAGCACGCCGGCGACCTGGCCGCGATCCTGTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCA
TGTCGCGGCCCGCCGAGGAGATGCTGTACATGGCGATGGAGGACTACCGGGTCGACGTCATCGTCGGCAAGGGCCCCGGC
GCCACCGCCATCCCCCTGGAGCTGCCGCCCTTCACGCTGGTCGGCGCCACCACCCGCGCGGGCCTGCTGCCGCCCCCGCT
GCGCGACCGCTTCGGCTTCACCGCGCACATGGAGTTCTACGAGCCCCCCGAGCTGGAGCGGGTGATCCACCGCTCGGCGA
ACCTGCTCGACGTCGAGATCGAGGCCGACGGCGCCGCCGAGATCGCCGGCCGTTCCCGCGGCACGCCCCGCATCGCCAAC
CGTCTGCTGCGCCGGGTGCGCGACTACGCCCAGGTCAAGGCCGACGGCCTGATCACCCGCGACATCGCCGCGGCGGCCCT
CGCCGTCTACGAGGTCGACGCCCGTGGCCTCGACCGCCTGGACCGGGGGGTCCTTCAGGCCCTGCTCAGGCTGTTCGGCG
GCGGCCCGGTCGGTCTGTCCACGCTCGCGGTCGCGGTGGGGGAGGAGCGGGAGACCGTGGAGGAGGTCGCCGAACCGTTC
CTCGTCCGGGAGGGCCTGCTCGCCCGCACCCCGCGCGGCCGGGTCGCCACGCCCGCGGCATGGGCGCATCTCGGCCTGAC
CCCGCCCCGGTCGGCGTCCACAGGAAACGGACAACAGGACCTGTTCGGGACGTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(39-197)

RuvB AAA lid domain (AAA_lid_4)

(200-273)

RuvB C-terminal winged helix domain (WHD_RuvB)

(275-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

54.545

90.659

0.495
  ruvB Synechocystis sp. PCC 6803

54.14

86.264

0.467
  ruvB Streptococcus pneumoniae TIGR4

51.235

89.011

0.456
  ruvB Streptococcus pneumoniae R6

51.235

89.011

0.456
  ruvB Streptococcus pneumoniae D39

51.235

89.011

0.456
  ruvB Helicobacter pylori 26695

50.314

87.363

0.44