Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   PYW30_RS08785 Genome accession   NZ_CP118950
Coordinates   1747228..1748163 (-) Length   311 a.a.
NCBI ID   WP_014025404.1    Uniprot ID   A0A6L2ZWA9
Organism   Lactococcus garvieae subsp. garvieae strain DSM 20684     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1742228..1753163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW30_RS08760 - 1742276..1743136 (-) 861 WP_042218433.1 S1 RNA-binding domain-containing protein -
  PYW30_RS08765 frr 1743244..1743801 (-) 558 WP_003133324.1 ribosome recycling factor -
  PYW30_RS08770 pyrH 1743831..1744547 (-) 717 WP_042218435.1 UMP kinase -
  PYW30_RS08775 - 1744638..1745831 (-) 1194 WP_042218438.1 acetate kinase -
  PYW30_RS08780 - 1745950..1747143 (-) 1194 WP_042218440.1 acetate kinase -
  PYW30_RS08785 comYH 1747228..1748163 (-) 936 WP_014025404.1 class I SAM-dependent methyltransferase Machinery gene
  PYW30_RS08790 - 1748209..1748439 (-) 231 WP_003133314.1 DUF3165 family protein -
  PYW30_RS08795 typA 1748514..1750355 (-) 1842 WP_003133313.1 translational GTPase TypA -
  PYW30_RS08800 - 1750676..1750888 (+) 213 WP_003133311.1 YqgQ family protein -
  PYW30_RS08805 - 1750881..1751846 (+) 966 WP_003133309.1 ROK family glucokinase -
  PYW30_RS08810 - 1751866..1752246 (+) 381 WP_017368654.1 rhodanese-like domain-containing protein -
  PYW30_RS08815 - 1752284..1752730 (-) 447 WP_003133306.1 Dps family protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35138.19 Da        Isoelectric Point: 4.6737

>NTDB_id=796698 PYW30_RS08785 WP_014025404.1 1747228..1748163(-) (comYH) [Lactococcus garvieae subsp. garvieae strain DSM 20684]
MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV
APMQANHNLTPDSIGFIFNFIIEELHKERKIRVLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQIDAVKPQPLESVDVVMSDLPVGYYPDDETARHFQVHDKSEHTYVHHLMIEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLADLADRSILQEFMSEFVKNVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=796698 PYW30_RS08785 WP_014025404.1 1747228..1748163(-) (comYH) [Lactococcus garvieae subsp. garvieae strain DSM 20684]
ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTGGTTCTTGAAAATATTATGGCAATTCAAGCGGAGCTTTTGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAGTTTGCATCTCTGACGAAGGAAAATAATG
ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAGTGGCAAAAGCTGTTTCAGTTTGTCTTGCTTCAAGGGTCACGTGTC
GCACCAATGCAAGCAAATCATAATTTAACACCAGATTCTATTGGGTTTATCTTTAATTTTATCATTGAAGAGTTGCACAA
AGAAAGAAAGATTCGTGTACTAGAATTTGGCTCAGGAACAGGGAATTTAGCGGAAACGCTCTTGGTTCATATGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTATCCGCTTCAATGTCAGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATTGACGCCGTGAAACCACAGCCCTTGGAGTCTGTAGATGTTGTGATGAGTGATCTCCCGGTTGG
TTATTATCCAGACGATGAAACTGCTCGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCACTTAATGA
TTGAGCAATCCTTTAAGTATCTGAAGGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCAGAATTTTTGAAGGCTTGGATTAAAGAACATGCACATGTTGCTGCAGTCATTACATTGCCTTCATCACTCTTTAAAGG
TGCAGGAAAATCGATTTATTTATTAAGTAAAAACCAAACAAATACACCAACTTTTGTTTACCCCTTGGCTGATTTAGCAG
ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTCAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(132-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L2ZWA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.677

99.678

0.495
  comYH Streptococcus mutans UA159

49.355

99.678

0.492